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• 17:07, 5 August 2016 ‎Obsolete instructions for Galaxy server on old HPC cloud (hist) ‎[10,937 bytes] ‎Rob Hooft (Talk | contribs) (Created page with " =Below are obsolete information for older HPC cloud. They are kept as reference.= == Cloud template == * change BUCKET_CLUSTER, BUCKET_DEFAULT, CLUSTER_NAME if a different bu...")
• 22:48, 16 December 2013 ‎WWW-TALA 2013-12-13 (hist) ‎[344 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Hadoop workshop * A VM to run the workshop helps a lot, especially if people download it beforehand ** Maybe make it possible to ssh into the VM, then it d...")
• 15:44, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/10/10 (hist) ‎[1,634 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/10/10"
• 15:44, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/07/04 (hist) ‎[1,634 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/07/04"
• 15:43, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/05/09 (hist) ‎[1,634 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/05/09"
• 15:43, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/03/14 (hist) ‎[1,634 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/03/14"
• 15:43, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/01/17 (hist) ‎[2,097 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/01/17"
• 15:42, 12 December 2013 ‎Agenda DTL Programmers Meeting 2014/12/12 (hist) ‎[1,634 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | Walk in freely for intervisi...") originally created as "Agenda BioAssist Programmers Meeting 2014/12/12"
• 14:29, 18 November 2013 ‎WWW-TALA 2013-11-15 (hist) ‎[340 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Galaxy Toolshed workshop was very good, well prepared * WiFi worked well * NGS Session was very good * Coffee with Egon was nice * Lunch discussion about a...")
• 21:11, 21 October 2013 ‎NGS Meeting on 13-12-2013 (hist) ‎[603 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 13 December 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border...")
• 22:41, 1 October 2013 ‎Galaxy trainings (hist) ‎[689 bytes] ‎Leon (Talk | contribs) (Created page with "This page contains a list of trainings using NBIC Galaxy server. {| cNamelass="wikitable sortable" border="1" |- ! Date ! Teachers ! Topics/Links |- | January 8-9, 2013 | * Jan ...")
• 19:22, 27 September 2013 ‎Agenda BioAssist Programmers Meeting 2013/12/13 (hist) ‎[1,866 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 19:06, 27 September 2013 ‎WWW-TALA 2013-09-13 (hist) ‎[366 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Hands on explanation of Conext: first time the different user standpoints were shown separated. == Take A Look At == * ITF room was too full, and the meet...")
• 10:37, 24 September 2013 ‎NGS Meeting on 15-11-2013 (hist) ‎[708 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 15 November 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border...")
• 10:37, 24 September 2013 ‎NGS Meeting on 11-10-2013 (hist) ‎[634 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 11 October 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=...")
• 13:39, 5 September 2013 ‎Agenda BioAssist Programmers Meeting 2013/10/11 (hist) ‎[1,980 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 16:35, 19 August 2013 ‎Metagenomics seminar on 3-12-2013 (hist) ‎[1,682 bytes] ‎Leon (Talk | contribs) (Created page with "Return to the main page of Metagenomics taskforce. File:allbio.png == Time & Location == TBA == Registration == If you want to attend this meeting, please send a...")
• 11:32, 31 July 2013 ‎Agenda BioAssist Programmers Meeting 2013/11/15 (hist) ‎[1,827 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 13:44, 17 July 2013 ‎Metagenomics seminar on 24-9-2013 (hist) ‎[2,151 bytes] ‎Leon (Talk | contribs) (Created page with "Return to the main page of Metagenomics taskforce. File:allbio.png == Time & Location == 12:00-16:00, 13 December 2012 [http://www.accommodatiedomstad.nl/ Cursus...")
• 13:19, 15 July 2013 ‎NGS Meeting on 13-09-2013 (hist) ‎[902 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 13 September 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" borde...")
• 16:34, 12 July 2013 ‎WWW-TALA 2013-07-12 (hist) ‎[883 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * The different discussions were very good * Reinout had prepared well for the code review discussion, made very good points * The code review was well done,...")
• 13:59, 8 July 2013 ‎VUmc (hist) ‎[214 bytes] ‎Freek de Bruijn (Talk | contribs) (Created page with "VU University medical center (VU is the abbreviation of "Vrije Universiteit"; literal translation from Dutch: "Free [as in liberty] University") [http://www.vumc.nl www.vumc.nl]...")
• 09:15, 24 June 2013 ‎Agenda BioAssist Programmers Meeting 2013/09/13 (hist) ‎[1,897 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:15, 24 June 2013 ‎Agenda BioAssist Programmers Meeting 2013/08/16 (hist) ‎[1,614 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 15:50, 21 June 2013 ‎WWW-TALA 2013-06-14 (hist) ‎[239 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Neo4J talk was very good * Nice to hear about the "crazy idea" of browser computing. == Take A Look At == * If a talk is about beer, the beer at the drin...")
• 09:23, 13 June 2013 ‎NGS PI Meeting on 18-06-2013 (hist) ‎[1,339 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 14:00-16:00, 18 June 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 ...") originally created as "NGS Meeting on 18-06-2013"
• 08:59, 21 May 2013 ‎WWW-TALA 2013-05-17 (hist) ‎[174 bytes] ‎Vlietmsvan (Talk | contribs) (Created page with "== What Went Well == * Open PHACTS session via Skype went very well * The day had different/diverse topics == Take A Look At == Category:BioAssist / Agendas and Minutes")
• 14:29, 19 April 2013 ‎WWW-TALA 2013-04-12 (hist) ‎[275 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Workshop unit tests was great == Take A Look At == * Speakers should be in time * We should rename NBIC to have a less ambiguous name (not close to NIBC) ...")
• 17:36, 12 March 2013 ‎WWW-TALA 2013-03-08 (hist) ‎[454 bytes] ‎Freek de Bruijn (Talk | contribs) (WWW and TALA for March 8th 2013.)
• 11:52, 7 March 2013 ‎NGS Meeting on 12-07-2013 (hist) ‎[889 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 12 July 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 11:50, 7 March 2013 ‎NGS Meeting on 14-06-2013 (hist) ‎[966 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 14 June 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 14:39, 4 March 2013 ‎NBIC2013 workshop (hist) ‎[3,241 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== Brainstorm "Infrastructure" workshop NBIC2013 == * subjects * Infrastructure, based on use cases like "NFU" data. * What are the different needs? * Hosting a web ...")
• 17:16, 26 February 2013 ‎Agenda BioAssist Programmers Meeting 2013/06/14 (hist) ‎[2,117 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 14:32, 25 February 2013 ‎Agenda BioAssist Programmers Meeting 2013/07/12 (hist) ‎[2,420 bytes] ‎Freek de Bruijn (Talk | contribs) (First version with presentation by Richard Finkers (WUR).)
• 22:33, 11 February 2013 ‎WWW-TALA 2013-02-08 (hist) ‎[433 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Anni Intro * Having 3 different subjects, with a lecture and a workshop linked together, was nice * Good Code Review * Nice to have a look at a piece of Py...")
• 01:36, 6 February 2013 ‎Proteomics:Programmers Meeting on 2013-01-11 (hist) ‎[5,110 bytes] ‎Freek de Bruijn (Talk | contribs) (First version of minutes.)
• 18:43, 31 January 2013 ‎Agenda BioAssist Programmers Meeting 2013/05/17 (hist) ‎[1,837 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:23, 31 January 2013 ‎NGS Meeting on 17-05-2013 (hist) ‎[618 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 17 May 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + ...")
• 09:28, 25 January 2013 ‎WWW-TALA 2013-01-11 (hist) ‎[261 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Well improvised when agenda changed == Take A Look At == * We really want the talk on auditing by Ronald Koorn * We need to have backup presentations for ...")
• 07:25, 24 January 2013 ‎Agenda BioAssist Programmers Meeting 2013/04/12 (hist) ‎[2,110 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 11:04, 8 January 2013 ‎NGS Meeting on 12-04-2013 (hist) ‎[1,183 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 12 April 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 ...")
• 11:03, 8 January 2013 ‎NGS Meeting on 08-03-2013 (hist) ‎[1,030 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 8 March 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 11:03, 8 January 2013 ‎NGS Meeting on 08-02-2013 (hist) ‎[700 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 8 Febuary 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1...")
• 15:20, 18 December 2012 ‎WWW-TALA 2012-12-14 (hist) ‎[141 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Nice subjects and discussions == Take a Look At == * NS and attendance")
• 16:25, 22 November 2012 ‎WWW-TALA 2012-10-12 (hist) ‎[300 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Code review == Take a look at == * Too much technology * Attendance was low * Train schedules were horrible * There is no coffee in the second room in the...")
• 16:15, 22 November 2012 ‎WWW-TALA 2012-11-09 (hist) ‎[421 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Having a theme * Attendance, all the way until the end * Demo's * Honesty of Machiel regarding the problems with the Cloud storage * No egg-throwing at "g...")
• 15:00, 22 November 2012 ‎Agenda BioAssist Programmers Meeting 2013/03/08 (hist) ‎[1,981 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 11:47, 5 November 2012 ‎NGS Meeting on 11-01-2013 (hist) ‎[853 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 11 January 2013 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=...")
• 19:01, 31 October 2012 ‎Metagenomics seminar on 13-12-2012 (hist) ‎[2,081 bytes] ‎Leon (Talk | contribs) (Created page with "Return to the main page of Metagenomics taskforce. File:allbio.png == Time & Location == 12:00-16:00, 13 December 2012 [http://www.accommodatiedomstad.nl/ Cursus...")
• 12:07, 24 October 2012 ‎NBIC Galaxy Server: How to update NBIC Galaxy (hist) ‎[290 bytes] ‎Leon (Talk | contribs) (Created page with " == Cloud template == * change BUCKET_CLUSTER, BUCKET_DEFAULT, CLUSTER_NAME if a different bucket name is used at the cloudman script download site. For example http://downloads....")
• 15:45, 10 October 2012 ‎Agenda BioAssist Programmers Meeting 2013/02/08 (hist) ‎[1,900 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 15:59, 5 October 2012 ‎NGS Meeting on 14-12-2012 (hist) ‎[575 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 14 December 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border...")
• 13:20, 25 September 2012 ‎Agenda BioAssist Programmers Meeting 2012/12/14 (hist) ‎[1,721 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 06:51, 24 September 2012 ‎Agenda BioAssist Programmers Meeting 2013/01/11 (hist) ‎[2,089 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 10:54, 17 September 2012 ‎WWW-TALA 2012-09-14 (hist) ‎[481 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Interesting discussion about the foundation ** Good to have statements to lead the discussion * Nice variation of topics * Wine for the speakers == Take ...")
• 15:37, 11 September 2012 ‎NGS Meeting on 09-11-2012 (hist) ‎[974 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 9 November 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=...")
• 11:09, 10 September 2012 ‎Proteomics:Programmers Meeting on 2012-08-17 (hist) ‎[4,521 bytes] ‎Freek de Bruijn (Talk | contribs) (First version.)
• 16:49, 4 September 2012 ‎WWW-TALA 2012-08-17 (hist) ‎[407 bytes] ‎Freek de Bruijn (Talk | contribs) (Added evaluation.)
• 11:27, 27 August 2012 ‎NGS Meeting on 12-10-2012 (hist) ‎[992 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 12 October 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=...")
• 20:55, 20 August 2012 ‎Metagenomics seminar on 25-9-2012 (hist) ‎[2,070 bytes] ‎Leon (Talk | contribs) (Created page with "Return to the main page of Metagenomics taskforce. File:allbio.png == Time & Location == 12:00-16:00, 25 September 2012 [http://www.accommodatiedomstad.nl/ Cursu...")
• 11:21, 20 July 2012 ‎Agenda BioAssist Programmers Meeting 2012/11/09 (hist) ‎[2,024 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "Thematic meeting: Cloud applications. (?) {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div...")
• 09:34, 5 July 2012 ‎WWW-TALA 2012-06-22 (hist) ‎[152 bytes] ‎David.van.enckevort (Talk | contribs) (Created page with "== What Went Well == * Moderator * Speakers * Wine * 1 Topic == Take A Look At == * Running Late * 1 Topic")
• 09:13, 5 July 2012 ‎Agenda BioAssist Programmers Meeting 2012/10/12 (hist) ‎[1,871 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:13, 5 July 2012 ‎Agenda BioAssist Programmers Meeting 2012/09/14 (hist) ‎[1,978 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:03, 3 July 2012 ‎Agenda BioAssist Programmers Meeting 2012/08/17 (hist) ‎[2,047 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:03, 3 July 2012 ‎Agenda BioAssist Programmers Meeting 2012/07/20 (hist) ‎[193 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 17:58, 26 June 2012 ‎NGS Meeting on 14-9-2012 (hist) ‎[1,231 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 14 September 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" borde...")
• 09:24, 26 June 2012 ‎NGS Meeting on 17-8-2012 (hist) ‎[1,056 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 17 August 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1...")
• 15:50, 13 June 2012 ‎NGS Meeting on 20-7-2012 (hist) ‎[114 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 22 June 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 09:22, 4 June 2012 ‎WWW-TALA 2012-05-25 (hist) ‎[498 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "=== What Went Well === * Wine for the speakers was very much appreciated (but probably won't be repeated anyway....) * Focus on one topic * Audience stayed for the whole session ...")
• 17:57, 31 May 2012 ‎NGS Meeting on 22-6-2012 (hist) ‎[1,095 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 22 June 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 08:59, 15 May 2012 ‎Metagenomics seminar on 19-6-2012 (hist) ‎[2,224 bytes] ‎Leon (Talk | contribs) (Created page with "Return to the main page of Next Generation Sequencing taskforce. File:allbio.png == Time & Location == 10:00-16:00, 19 June 2012 [http://www.accommodatiedomstad....")
• 17:07, 9 May 2012 ‎NBIC Galaxy meeting 2012-5-21 (hist) ‎[2,610 bytes] ‎Leon (Talk | contribs) (Created page with "== Agenda == * brief introduction of cloud UI (Leon) * VM layout, OS image, tool image, data image (flexible sizing) (Mattias) * policy on installing tools, libraries, reference ...")
• 17:17, 21 April 2012 ‎WWW-TALA 2012-04-20 (hist) ‎[311 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "=== What Went Well === * Lecture Peter Sijmons was really nice external lecture. * Thema-based day was good (but carries risk that people that think they are not interested are n...")
• 09:28, 11 April 2012 ‎Metagenomics (hist) ‎[1,149 bytes] ‎Leon (Talk | contribs) (Created page with "== Main Missions == == Recent Highlights == * A growing number of groups is joining our monthly meetings: BaseClear, DSM, NKI, etc. ==...")
• 11:32, 29 March 2012 ‎WWW-TALA 2012-03-23 (hist) ‎[208 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * The "make" session: needs followup hands-on * The "BioBanking" talk == Take a look at == * Trains * Lightning talks were missing in action")
• 09:16, 27 March 2012 ‎CytoscapeRPC 1.8 Release notes (hist) ‎[202 bytes] ‎Jjbot (Talk | contribs) (Created page with "To be written.")
• 10:59, 23 March 2012 ‎Agenda BioAssist Programmers Meeting 2012/4/20 (hist) ‎[2,153 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 10:59, 23 March 2012 ‎Agenda BioAssist Programmers Meeting 2012/6/22 (hist) ‎[1,862 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 13:08, 5 March 2012 ‎Agenda BioAssist Programmers Meeting 2012/5/25 (hist) ‎[2,536 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "Thematic day together with NMC and TTO's : software licensing, valorization and durability. {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subje...")
• 12:17, 22 February 2012 ‎NGS Meeting on 25-5-2012 (hist) ‎[1,004 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 25 May 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + ...")
• 12:16, 22 February 2012 ‎NGS Meeting on 20-4-2012 (hist) ‎[1,277 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 20 April 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 ...")
• 19:20, 21 February 2012 ‎WWW-TALA 2012-02-17 (hist) ‎[320 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "= Evaluation of the meeting = === What Went Well === * Attendance: 38 people * Lunch * Lecture Biology behind NGS was good * Lightning talks === Take a look at === * Proteomic...")
• 15:06, 13 February 2012 ‎Metagenomics seminar on 10-4-2012 (hist) ‎[4,169 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 10:00-16:00, 10 April 2012 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Registration == If you want to attend th...")
• 11:10, 7 February 2012 ‎Proteomics:Gaining Momentum Meeting on 2011-11-14 (hist) ‎[2,954 bytes] ‎Freek de Bruijn (Talk | contribs) (Created page with "== Location and time == * Location: Kruytbuilding (6th floor, east wing), Padualaan 8, 3584 CH Utrecht * Date: Monday November 14th, 2011 * Time: 13:00-17:00 == Attendees == ...") originally created as "Gaining Momentum Meeting on 2010-11-14"
• 14:18, 23 January 2012 ‎Lightning Talks (hist) ‎[510 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "Starting February 2012 we have a slot for '''Lightning Talks''' in the monthly Bioassist programmers meetings. Here are the rules: * If you have a subject, announce it at the la...")
• 14:11, 23 January 2012 ‎WWW-TALA 2012-01-13 (hist) ‎[231 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Technical subjects were nice == Take A Look At == * Added a rule to the ground rules * We should have the contact details for the speakers available via t...")
• 12:53, 11 January 2012 ‎NGS Meeting on 23-3-2012 (hist) ‎[1,469 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 23 March 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 ...")
• 11:53, 19 December 2011 ‎Agenda BioAssist Programmers Meeting 2012/3/23 (hist) ‎[1,763 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 17:42, 9 December 2011 ‎WWW-TALA 2011/12/09 (hist) ‎[207 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "=== What Went Well === * Workshop was very good * Nice to have more space available * Robert's talk on the dependency injection pattern was very well structured")
• 11:04, 5 December 2011 ‎Assembly metrics explained (hist) ‎[2,424 bytes] ‎JanVanHaarst (Talk | contribs) (Created page with "Explanation of assembly metrics : * Runtime (in minute) * Max memory * sequencelength * Largest contig * Number of contigs larger than 100 * N50 length * N50 index * Number o...")
• 14:17, 1 December 2011 ‎NGS Chip-Seq (hist) ‎[918 bytes] ‎Leon (Talk | contribs) (Created page with "This page summarizes ChIP-Seq related activities carried out by the NGS taskforce member groups.")
• 14:15, 1 December 2011 ‎NGS RNA-Seq (hist) ‎[3,947 bytes] ‎Leon (Talk | contribs) (Created page with "This page summarizes RNA-seq related activities carried out by the NGS taskforce member groups.")
• 16:05, 30 November 2011 ‎NGS PI Meeting on 26-1-2012 (hist) ‎[2,386 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 10:00-16:00, 26 January 2011 Hojel City Center, gebouw D Meeting room Vk1, 5th floor Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class...")
• 13:04, 30 November 2011 ‎Agenda BioAssist Programmers Meeting 2012/2/17 (hist) ‎[2,023 bytes] ‎Leon (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 16:55, 28 November 2011 ‎WWW-TALA 2011/11/18 (hist) ‎[248 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Biology lecture * Hosting QA == Take a look at == * Biology people need to know how much background we have (but it differs...) * Speak up! * Need more ...")
• 23:03, 17 November 2011 ‎Proteomics:Programmers Meeting on 2011-10-14 (hist) ‎[3,264 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for Proteomics Programmers Meeting on 2011-10-14.) originally created as "Https://wiki.nbic.nl/index.php/Proteomics:Programmers Meeting on 2011-10-14"
• 17:56, 15 November 2011 ‎Agenda BioAssist Programmers Meeting 2012/1/13 (hist) ‎[1,797 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 17:24, 15 November 2011 ‎NGS Meeting on 17-2-2012 (hist) ‎[1,577 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 17 February 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border...")
• 17:24, 15 November 2011 ‎NGS Meeting on 13-1-2012 (hist) ‎[1,113 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 13 January 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=...")
• 14:41, 8 November 2011 ‎CytoscapeRPC 1.7 Release notes (hist) ‎[285 bytes] ‎Jjbot (Talk | contribs) (Created page with "* Added function to save session as Cys file. * Added tooltip delay management. * Added parameters for optionally redrawing a network when changing the appearance. * Added additi...")
• 13:13, 28 October 2011 ‎NBIC Proteomics Tools (hist) ‎[149 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable sortable" border="1" |- ! Package ! Category ! Domain ! Description ! Author/contact ! Publication ! Software {{AllNBICTools}} |}")
• 13:09, 28 October 2011 ‎NBIC Tools With Download Link (hist) ‎[149 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable sortable" border="1" |- ! Package ! Category ! Domain ! Description ! Author/contact ! Publication ! Software {{AllNBICTools}} |}")
• 10:50, 17 October 2011 ‎WWW-TALA 2011/10/14 (hist) ‎[315 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Nice to have an external speaker == Take a Look At == * Theoretical lecture. We would benefit from an "applied" training. * A/C is noisy and not very ef...")
• 18:54, 13 October 2011 ‎Proteomics:Programmers Meeting on 2011-09-16 (hist) ‎[3,551 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for Proteomics Programmers Meeting on 2011-09-16.)
• 16:21, 11 October 2011 ‎Genome Browser Seminar on 19-12-2011 (hist) ‎[2,444 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 16 September 2011 colloquiumzaal A, Erasmus MC, Rotterdam == Agenda == {| class="wikitable" border=1 + Agenda ! Time slot !! Responsible !! ...")
• 15:30, 9 October 2011 ‎NCSB CBSG meeting 2011 10 07 (hist) ‎[307 bytes] ‎Harm Nijveen (Talk | contribs) (Created page with "The purpose of this meeting was to identify further collaboration opportunities between [http://www.cbsg.nl CBSG] and NBIC groups within the Netherlands Consortium for Systems Bi...")
• 14:36, 9 October 2011 ‎NCSB Meeting 20100226 (hist) ‎[2,155 bytes] ‎Harm Nijveen (Talk | contribs) (Created page with "This was the first meeting of the modellers and bioinformaticians in the Netherlands Consortium for Systems Biology([http://www.ncsb.nl NCSB]), held on 26th of February 2010. The...") originally created as "NCSB Meeting 20090226"
• 11:56, 26 September 2011 ‎Open Source Licenses (hist) ‎[10,588 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "This is a Frequently Asked Questions list about open source software licenses. == How does copyright & licensing work? == Copyright is something you get for any creative produc...")
• 15:26, 23 September 2011 ‎WWW-TALA 2011/09/16 (hist) ‎[180 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Attendance * Lunch * Topics == Take a Look At == * No tea in tea break * Too warm * No tripod for the camera Category:BioAssist / Agendas and Minutes")
• 11:34, 15 September 2011 ‎WWW-TALA 2011/08/12 (hist) ‎[327 bytes] ‎Freek de Bruijn (Talk | contribs) (First version.)
• 18:21, 14 September 2011 ‎Proteomics:Programmers Meeting on 2011-08-12 (hist) ‎[1,759 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for Proteomics Programmers Meeting on 2011-08-12.)
• 15:39, 14 September 2011 ‎Proteomics:Programmers Meeting on 2011-07-15 (hist) ‎[2,061 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes by Henk for Proteomics Programmers Meeting on 2011-07-15.)
• 15:13, 13 September 2011 ‎2011 advanced RNA-seq course (hist) ‎[3,274 bytes] ‎Leon (Talk | contribs) (Created page with "== program & course material == {| {{table}} | align="center" style="background:#f0f0f0;"|'''Day 1''' |- | 25-Aug-11 |- | |- | Time |- | Activity |- | Speaker / Practical Super...")
• 14:41, 13 September 2011 ‎NBIC Galaxy Server: Dataset (hist) ‎[234 bytes] ‎Leon (Talk | contribs) (Created page with "== Reference Genome == Below is a list of genome builds installed at NBIC Galaxy. * hg18 (supports bowtie, samtools) * hg19 (supports bowtie, lastz, samtools) * mm9 (supports bow...")
• 17:15, 12 September 2011 ‎Glossary (hist) ‎[80 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "<dl> <dt>EMC <dd>Erasmus University Medical Center </dl>")
• 16:43, 6 September 2011 ‎InstallLiftOver (hist) ‎[677 bytes] ‎Freek de Bruijn (Talk | contribs) (Start of Installation Guide UCSC liftOver.)
• 14:11, 25 August 2011 ‎NGS Meeting on 18-11-2011 (hist) ‎[1,272 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 16 September 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" borde...")
• 11:29, 5 August 2011 ‎NBIC Tools (hist) ‎[149 bytes] ‎Marcvandriel (Talk | contribs) (Created page with "{| class="wikitable sortable" border="1" |- ! Category ! Package ! Description ! Author ! Publication ! Software |- | visualisation | [http://www.win.tue.nl/~mwestenb/genevis/ind...")
• 08:59, 26 July 2011 ‎NGS Meeting on 14-10-2011 (hist) ‎[996 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 16 September 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" borde...")
• 17:15, 16 July 2011 ‎WWW-TALA 2011/07/15 (hist) ‎[287 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Good discussions about big data and HTML5 * Lunch * Extra free time to communicate * Nice to have a live mindmap of the big data discussion == Take a Loo...")
• 11:23, 13 July 2011 ‎Agenda BioAssist Programmers Meeting 2011/09/16 (hist) ‎[1,929 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 16:53, 11 July 2011 ‎Agenda BioAssist Programmers Meeting 2011/12/09 (hist) ‎[1,499 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 10:10, 11 July 2011 ‎Agenda BioAssist Programmers Meeting 2011/11/18 (hist) ‎[1,810 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 09:02, 8 July 2011 ‎Proteomics:Programmers Meeting on 2011-06-17 (hist) ‎[2,599 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for Proteomics Programmers Meeting on 2011-06-17.)
• 16:49, 27 June 2011 ‎Agenda BioAssist Programmers Meeting 2011/10/14 (hist) ‎[1,918 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 13:46, 21 June 2011 ‎WWW-TALA 2011/06/17 (hist) ‎[175 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Last minute program change interesting * Internet was fast * Lunch == Take a Look At == * Power sockets Category:BioAssist / Agendas and Minutes")
• 17:02, 20 June 2011 ‎Agenda BioAssist Programmers Meeting 2011/08/12 (hist) ‎[2,040 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 18:16, 16 June 2011 ‎Proteomics:Programmers Meeting on 2011-05-20 (hist) ‎[2,715 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for proteomics programmer's meeting on 2011-05-20.)
• 09:32, 16 June 2011 ‎Lecture History (hist) ‎[11,413 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "This is a collection of BioAssist lectures for which the presentation materials are available on line, {| border="1" style="vertical-align: text-top;" |Date |Location |Presenter...")
• 13:49, 7 June 2011 ‎Agenda BioAssist Programmers Meeting 2011/07/15 (hist) ‎[1,662 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 18:42, 6 June 2011 ‎KeyGene/BioAssist NGS Workshop on 4-7-2011 (hist) ‎[1,622 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == KeyGene == Agenda == {| class="wikitable" border=1 + Agenda ! Time slot !! Responsible !! Subject |- |- |} == Participants == * Roeland van Ham (KeyG...")
• 17:43, 6 June 2011 ‎NGS Meeting on 16-9-2011 (hist) ‎[1,155 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 16 September 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" borde...")
• 22:17, 24 May 2011 ‎WWW-TALA 2011/05/20 (hist) ‎[413 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * WAF comparison side-by-side was a nice subject * Mutalizer experience from academic to professional. * Lunch == Take a Look At == * Attendance: people n...")
• 23:26, 17 May 2011 ‎Proteomics:Programmers Meeting on 2011-04-15 (hist) ‎[2,440 bytes] ‎Freek de Bruijn (Talk | contribs) (Minutes for Proteomics Programmers Meeting on 2011-04-15)
• 13:18, 17 May 2011 ‎CytoscapeRPC 1.5 Release notes (hist) ‎[162 bytes] ‎Jjbot (Talk | contribs) (Created page with "Bug fix release: omission of a newline in the plugin property file cause the 1.4 plugin not to install. Has been fixed in version 1.5.")
• 12:49, 17 May 2011 ‎CytoscapeRPC 1.6 Release notes (hist) ‎[524 bytes] ‎Jjbot (Talk | contribs) (Created page with "* Added logging functionality: the user can now indiate which messages to display in the message bar. This can decrease overhead when making many calls to Cytoscape. The log leve...")
• 12:27, 11 May 2011 ‎BET2 (hist) ‎[1,226 bytes] ‎David.van.enckevort (Talk | contribs) (Created page with "== System specifications == * CPU: Intel(R) Core(TM) i7 CPU 920 @ 2.67GHz * Cores: 8 * Memory: 24GB * Disks: Device: /dev/sda Type: SATA Size: 1...")
• 19:25, 10 May 2011 ‎Dynamic Lightpath (hist) ‎[3,227 bytes] ‎Horvatovich (Talk | contribs) (Created page with "- Connected sites - * DLSG cluster at University of Groningen. Contact persons: Isthiaq Ahmad, Peter Horvatovich, Rainer Bischoff. * DLSG cluster at Academic Medical Center. Con...")
• 16:00, 2 May 2011 ‎CytoscapeRPCExamples (hist) ‎[1,862 bytes] ‎Jjbot (Talk | contribs) (Created page with "A number of examples for CytoscapeRPC have been provided in the CytoscapeRPC svn. A brief description is given here. * [https://trac.nbic.nl/cytoscaperpc/browser/CytoscapeRPC/sc...")
• 18:29, 21 April 2011 ‎NGS Meeting on 12-8-2011 (hist) ‎[609 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 12 August 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1...")
• 13:15, 21 April 2011 ‎NGS Meeting on 15-7-2011 (hist) ‎[1,033 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 15 July 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 10:03, 21 April 2011 ‎Design Patterns (hist) ‎[562 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== The reasons why to use design patterns == == a few much used design patterns == Examples of frameworks using design patterns: Java.Model View Controller (Swing), Decorator (...")
• 14:37, 18 April 2011 ‎HadoopNBIC2011Install (hist) ‎[1,163 bytes] ‎Evert (Talk | contribs) (Created page with "== Instructions for the Hadoop workshop during NBIC'11 == We have a VirtualBox image with 64bit Ubuntu available for you. Requirements for running it are: * A 64bit OS (tested o...")
• 20:57, 12 April 2011 ‎Proteomics:Programmers Meeting on 2011-03-18 (hist) ‎[2,647 bytes] ‎Freek de Bruijn (Talk | contribs) (First version.)
• 13:37, 11 April 2011 ‎Proteomics Tools (hist) ‎[20,516 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "This is a list of Proteomics tools created by the NBIC BioAssist task force '''Please feel free to add your tools and your experiences!''' You can make a new pag...")
• 15:11, 4 April 2011 ‎How to use NBIC Trac (hist) ‎[3,368 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "The NBIC Trac system is a development system for software tools developed in collaborations that involve NBIC. It is a single site that keeps all development together; this makes...")
• 14:03, 4 April 2011 ‎NBIC Conference 2011: BioAssist Tutorials Installation (hist) ‎[3,753 bytes] ‎Jjbot (Talk | contribs) (Created page with "=Installation instructions for the software tutorials=")
• 13:22, 4 April 2011 ‎CytoscapeRPC 1.4 Release notes (hist) ‎[1,463 bytes] ‎Jjbot (Talk | contribs) (Created page with "=Release notes CytoscapeRPC 1.4= ==Functions added== * getFontFaces: list all the available fonts. * saveNetwork: save a network to a gml file. * setShowGraphicsDetail: set the ...")
• 10:12, 4 April 2011 ‎Dutch Variant Database (hist) ‎[7,741 bytes] ‎Leon (Talk | contribs) (Created page with "== Discussions on 2011-3-10 == ==== Participants ==== ==== Action Points ==== * Ies, Christian, Jeroen, Robert will check with their groups on the data privacy policy and do an...")
• 15:23, 21 March 2011 ‎WWW-TALA 2011/03/18 (hist) ‎[270 bytes] ‎Rob Hooft (Talk | contribs) (Created page with " == What Went Well == * Subjects of the presentations == Take a Look At == * We need a space "outside" of the main room for hacking in a "side-meeting". * Lunch was tight * Pr...")
• 00:27, 20 March 2011 ‎NGS Meeting on 17-6-2011 (hist) ‎[1,080 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 17 June 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 +...")
• 16:22, 18 March 2011 ‎Biobanking Tools (hist) ‎[2,112 bytes] ‎David.van.enckevort (Talk | contribs) (Created page with "{| class="wikitable sortable" border="1" |- ! Category ! Package ! Description ! Performance experience |- | GenABEL | [http://www.genabel.org/] | Genome Wide SNP association ana...")
• 15:57, 18 March 2011 ‎Data Visualization (hist) ‎[3,202 bytes] ‎HarmNijveen (Talk | contribs) (Created page with "== Web sites about data visualization == * [http://www.visualcomplexity.com/ Visual Complexity], overview of methods for visualization of complex networks. By Manuel Lima. * [htt...")
• 23:39, 17 March 2011 ‎Proteomics:Programmers Meeting on 2011-02-18 (hist) ‎[2,870 bytes] ‎Freek de Bruijn (Talk | contribs) (Created page with "== Location and time == * Location: Hojel City Center, building D (5th floor), Graadt van Roggenweg 340, 3531 AH Utrecht * Date: Friday February 18th, 2011 * Time: 9:00-10:30 ...")
• 11:20, 15 March 2011 ‎Leiden University (hist) ‎[305 bytes] ‎Freek de Bruijn (Talk | contribs) (Added Leiden University and Leiden University Medical Center.)
• 16:47, 11 March 2011 ‎R ggplot2 tutorial (hist) ‎[12,916 bytes] ‎R.W.W.Brouwer (Talk | contribs) (Created page with "=== Installing R === R can be obtained from [http://www.r-project.org/ http://www.r-project.org/], but due to the limited band-with in this venue problems may arise in downloadi...") originally created as "R ggplot2 tutorial here"
• 14:16, 10 March 2011 ‎Agenda BioAssist Programmers Meeting 2011/6/17 (hist) ‎[1,742 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 14:16, 10 March 2011 ‎Agenda BioAssist Programmers Meeting 2011/5/20 (hist) ‎[1,808 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 14:14, 10 March 2011 ‎Agenda BioAssist Programmers Meeting 2011/4/15 (hist) ‎[1,724 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 13:44, 28 February 2011 ‎CytoscapeProperties (hist) ‎[8,820 bytes] ‎Jjbot (Talk | contribs) (Created page with "=Layouts= ==Layout Properties== {|class="wikitable" !colspan=3 align="left" id="Layout_Names"|Layout Names |- | Attribute layout || [[#Contig Layout | Con...")
• 12:53, 28 February 2011 ‎NBIC & VIB Bioinformatics RPM Repository (hist) ‎[10,261 bytes] ‎David.van.enckevort (Talk | contribs) (Created page with "== Goal == The goal of the NBIC & VIB shared Bioinformatics RPM Repository is to come to a stable repository of easily installable packages for the common bioinformatics tools th...")
• 10:14, 24 February 2011 ‎Spotfire (hist) ‎[4,670 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "Spotfire is a visualisation tool. It was shown by Alex Michie from [http://crosslinks-it.com/ Crosslinks] on the 18 February 2011 BioAssist Programmers meeting. This page was c...")
• 13:57, 23 February 2011 ‎Timing of a 3 hour sprint (hist) ‎[202 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{! t+x ! what |- | 0:00-0:15 | Sprint planning |- | 1:00-1:05 | Scrum |- | 2:00-2:05 | Scrum |- | 2:50-3:00 | Sprint evaluation |}")
• 18:02, 22 February 2011 ‎Comparing XML files from intext-semantics (hist) ‎[3,709 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "This is a python script that can be used to compare two output files of the intext-semantics project. It is tailored to the comparison of a run over a scientific paper with two d...")
• 16:43, 21 February 2011 ‎WWW-TALA 2011/02/18 (hist) ‎[180 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Lunch * Discussions == Take a Look At == * Baked eggs for lunch? * More discussions * Beamer compatibility")
• 18:05, 19 February 2011 ‎NGS Meeting on 20-5-2011 (hist) ‎[1,212 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 20 May 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + ...")
• 23:25, 17 February 2011 ‎Proteomics:Programmers Meeting on 2011-01-21 (hist) ‎[4,713 bytes] ‎Freek de Bruijn (Talk | contribs) (Created the minutes for the Programmer's Meeting on 2011-01-21)
• 22:19, 9 February 2011 ‎NGS Meeting on 15-4-2011 (hist) ‎[1,135 bytes] ‎Leon (Talk | contribs) (Created page with "== Time & Location == 9:00-10:30, 15 April 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 ...")
• 13:25, 7 February 2011 ‎NBIC Conference 2011: BioAssist Tutorials (hist) ‎[5,047 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "At the 2011 NBIC conference, the BioAssist "TechTrack" session will consist of parallel tutorials that people can attend at their own speed. This page collects ideas and organis...")
• 14:23, 4 February 2011 ‎CytoscapeRPC 1.3 Release notes (hist) ‎[1,362 bytes] ‎Jjbot (Talk | contribs) (Created page with "New functionality: * raise and resize Cytoscape network windows * decouple node width & hight: after doing this you can control the node width and hight seperately from your vizm...")
• 10:30, 4 February 2011 ‎Database Optimization (hist) ‎[827 bytes] ‎Leon (Talk | contribs) (Created page with "== How to start first == * Make sure you are using utf8 instead of latin1. This will help you to avoid annoying problems in long run * If your table size is at the level of GBs,...")
• 22:19, 29 January 2011 ‎WWW-TALA 2011/01/21 (hist) ‎[326 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What Went Well == * Lunch * Getting Things Done * The grid lecture had nice technical details * Hadoop lecture == Take a Look At == * The grid lecture was a bit too much tech...")
• 11:01, 28 January 2011 ‎GSCF and Molgenis Hackathon project (hist) ‎[3,401 bytes] ‎Erikroos (Talk | contribs) (Created page with "== Background == Both the Generic Study Capturing Framework (GSCF) and several MOLGENIS-based applications, such as AnimalDB, can be used to capture and share data related to st...")
• 16:25, 27 January 2011 ‎Human Computation Hackathon project (hist) ‎[5,178 bytes] ‎CHC (Talk | contribs) (Created page with "This page is used to identify and prepare the NBIC Human Computation tasks at NBIC 2011 Hackathon. == Logistic Concerns == * Participants Andra Waagmeester, Kees Burger, * Har...")
• 12:30, 27 January 2011 ‎NBIC Hackathon April 2011 (hist) ‎[5,461 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "NBIC will be organising a hackathon 13,14 April 2011. Blabla == Projects for the hackathon == There are several proposals for projects: * NBIC Galaxy Hackathon == People...")
• 23:09, 24 January 2011 ‎Peregrine Based Text Indexing Architecture (hist) ‎[158 bytes] ‎Leon (Talk | contribs) (Created page with "File:TextIndexing.png * Category:Linker * Fingerprint response can be either in XML or JSON * Intext-Semantic This is the web service layer of Peregrine ind...")
• 16:08, 24 January 2011 ‎NBIC Galaxy Hackathon project (hist) ‎[10,361 bytes] ‎Leon (Talk | contribs) (Created page with "This page is used to prepare the NBIC Galaxy project at NBIC 2011 Hackathon. == Logistic Concerns == * Participants Alex Bossers, Leon Mei, Rutger Browers, * Hardware A NBIC G...") originally created as "NBIC Galaxy Hackathon"
• 15:51, 24 January 2011 ‎NBIC VIB meeting 2011-1-14 (hist) ‎[1,330 bytes] ‎Leon (Talk | contribs) (Created page with "== Date & Location == January 14th, 2011 NBIC BioAssist Engineering Team Office HB 10.090, Mekelweg 4 2628 CD Delft The Netherlands == Agenda == 9:30-10:00 Coffee 10:00-10:30 VI...")
• 15:28, 24 January 2011 ‎NBIC Galaxy meeting 2010-9-24 (hist) ‎[3,117 bytes] ‎Leon (Talk | contribs) (Created page with "== Stress test on 15 October == * We will need at least 3 working pipelines for the stress test. # Prepare the SNP calling pipeline and several sample FASTQ files (Jeroen) # Pre...")
• 09:55, 15 January 2011 ‎WWW-TALA 2010/12/17 (hist) ‎[346 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "== What went well == * Enough lunch * NGS population talk was great with more biology, applications of bioinformatics == Take a look at == * Weather * Explain collaborations *...")
• 09:49, 15 January 2011 ‎Agenda BioAssist Programmers Meeting 2011/3/18 (hist) ‎[1,965 bytes] ‎Rob Hooft (Talk | contribs) (Created page with "{| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Pa...")
• 16:15, 11 January 2011 ‎NGS Meeting on 18-3-2011 (hist) ‎[1,150 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 18 March 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agenda ...)
• 14:26, 21 December 2010 ‎Proteomics:Programmers Meeting on 2010-12-17 (hist) ‎[4,149 bytes] ‎Freek de Bruijn (Talk | contribs) (Meeting minutes.)
• 11:50, 20 December 2010 ‎NGS Meeting on 18-2-2011 (hist) ‎[1,064 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 18 February 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agend...)
• 23:16, 17 December 2010 ‎Agenda BioAssist Programmers Meeting 2011/2/18 (hist) ‎[2,006 bytes] ‎Rob Hooft (Talk | contribs) (New page: {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Parallel ses...)
• 08:53, 14 December 2010 ‎List of attendees for the next programmers meeting (hist) ‎[200 bytes] ‎Rob Hooft (Talk | contribs) (New page: This list is for people attending the December 17, 2010 meeting. Please indicate explicitly if you will skip lunch and/or the afternoon drinks == BioAssist scientific programmers == * ...) originally created as "List of attendees for the next BioAssist programmers meeting"
• 13:37, 6 December 2010 ‎Galaxy cloud (hist) ‎[293 bytes] ‎Rob Hooft (Talk | contribs) (New page: The BioAssist Engineering Team in collaboration with the NGS task force is working on a trial to extend the NBIC galaxy server using the Sara HPC cloud. A proposal for this trial has been...)
• 13:32, 6 December 2010 ‎Galaxy VM (hist) ‎[8,030 bytes] ‎Rob Hooft (Talk | contribs) (New page: In collaboration with the people running the NBIC Galaxy server, the BioAssist Engineering Team has made scripts that can extract a Galaxy Virtual Machine that has all the NBIC galaxy tool...)
• 22:04, 25 November 2010 ‎Proteomics:Programmers Meeting on 2010-11-19 (hist) ‎[4,524 bytes] ‎Freek de Bruijn (Talk | contribs) (Created the minutes for the Programmer's Meeting on 2010-11-19)
• 15:44, 25 November 2010 ‎Agenda BioAssist Programmers Meeting 2011/1/21 (hist) ‎[2,234 bytes] ‎Leon (Talk | contribs) (New page: {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Parallel ses...)
• 08:49, 24 November 2010 ‎NGS Meeting on 21-1-2011 (hist) ‎[1,200 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 21 January 2011 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agenda...)
• 08:48, 24 November 2010 ‎NGS Meeting on 17-12-2010 (hist) ‎[1,373 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 17 December 2010 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agend...)
• 23:28, 20 November 2010 ‎User:Ptdeboer (hist) ‎[368 bytes] ‎Ptdeboer (Talk | contribs) (New page: Piter T. de Boer is a Software Engineer who previously worked at the Informatics Institute (IvI) of the University of Amsterdam.<br> He now works for the BiGGriD project at NIKHEF.<br> <br...) originally created as "Piter de Boer"
• 13:51, 9 November 2010 ‎MyGrid (hist) ‎[499 bytes] ‎Rob Hooft (Talk | contribs) (New page: '''MyGrid''' is a consortium in the UK. The myGrid team produce and use a suite of tools designed to “help e-Scientists get on with science and get on with scientists”. The tools supp...)
• 13:49, 9 November 2010 ‎Myexperiment (hist) ‎[238 bytes] ‎Rob Hooft (Talk | contribs) (New page: '''MyExperiment''' is a social networking web site that can be used to exchange Taverna workflows. It is made and maintained by the MyGrid people at OMII UK. [[Category:E-sc...)
• 13:30, 9 November 2010 ‎Simulated Dataset Generation Script (hist) ‎[772 bytes] ‎Leon (Talk | contribs) (New page: == Letter-space == * https://trac.nbic.nl/ngstools/browser/SimulatedDataSet/Illumina/v0.1 version 1: create a dataset with accurate alignment position. ('''Done''') * version 2: create...)
• 13:03, 9 November 2010 ‎NGS Visualization Expertise (hist) ‎[3,329 bytes] ‎Leon (Talk | contribs) (New page: This page will describe the needs of visualization in NGS and our task force effort on that.)
• 12:28, 9 November 2010 ‎Taverna (hist) ‎[328 bytes] ‎Rob Hooft (Talk | contribs) (New page: '''Taverna''' is an open source and domain independent Workflow Management System – a suite of tools used to design and execute scientific workflows and aide in silico experimentation. ...)
• 11:19, 9 November 2010 ‎Benchmarking Alignment & Variants Calling Software (hist) ‎[3,601 bytes] ‎Leon (Talk | contribs) (New page: Return to the main page of Next Generation Sequencing ==Benchmarking Alignment & Variants Calling Software (Letter-space)== The benchmarking wrapper can wrap any alignment program and...)
• 10:41, 9 November 2010 ‎GvNL (hist) ‎[1,579 bytes] ‎Rob Hooft (Talk | contribs) (New page: This project aims to produce the bioinformatics resources needed by BBMRI-NL participating biobanks and rainbow and complementation projects, most notably in the context of Genoom van Nede...)
• 10:34, 9 November 2010 ‎NBIC Galaxy Server: NBIC Pipelines (hist) ‎[1,449 bytes] ‎Leon (Talk | contribs) (New page: On the NBIC Galaxy server and its VM packages, we share the NGS and Proteomics pipelines developed by NBIC staffs. They are all open source tools and freely available. We encourage both in...)
• 16:01, 8 November 2010 ‎OntoCat (hist) ‎[911 bytes] ‎Rob Hooft (Talk | contribs) (New page: OntoCAT or Ontology Common API Tasks is a Java library aiming to overcome the hurdle of querying multiple existing ontology resources. It supports both major ontology browsers: NCBO BioPo...)
• 14:05, 8 November 2010 ‎Linker (hist) ‎[1,172 bytes] ‎Rob Hooft (Talk | contribs) (New page: The Conceptweb-'''linker''' is an application to annotate web pages with scientific background information. The linker takes the text of a page, and sends it to a web service ([[Intext-se...)
• 13:25, 8 November 2010 ‎Project Matrix (hist) ‎[5,576 bytes] ‎Rob Hooft (Talk | contribs) (New page: A matrix of all task forces and other units in BioAssist, with their collaborative projects on the nodes. {| class="wikitable" border="1" ! v-Producer \ Customer-> ! Genomics ! Proteom...)
• 14:42, 5 November 2010 ‎Category System (hist) ‎[2,519 bytes] ‎Rob Hooft (Talk | contribs) (New page: Within each of the task forces, all of the pages in the wiki should be brought under the standard category system: Categories for each task force are: * '''<TaskForceName> / Agendas and M...)
• 10:09, 5 November 2010 ‎Conceptwiki (hist) ‎[448 bytes] ‎Rob Hooft (Talk | contribs) (New page: The Conceptwiki is a community-editable store of concepts used in life sciences. It has concepts from several databases built in: * Life science concepts from UMLS * Proteins from SwissPro...)
• 16:29, 31 October 2010 ‎Comparison of few data processing tools- A tabular view (hist) ‎[4,662 bytes] ‎Prasad (Talk | contribs) (New page: ''' Tools for data processing and analysis''' ** MetAlign ** METOT ** MSClust {| width="80%" border="1" cellpadding="2" cellspacing="0" |- !Processing tool !Major function...)
• 15:07, 26 October 2010 ‎CytoscapeRPC Ruby Example (hist) ‎[523 bytes] ‎Jjbot (Talk | contribs) (New page: XmlRpc is part of the standard library so no additional packages have to be installed. <source lang="ruby" line="GESHI_FANCY_LINE_NUMBERS"> require "xmlrpc/client" puts "Testing the Ruby...)
• 15:05, 26 October 2010 ‎CytoscapeRPC PHP Example (hist) ‎[495 bytes] ‎Jjbot (Talk | contribs) (New page: ==PHP== This code uses the PEAR XML-RPC2 package. See their [http://pear.php.net/manual/en/package.webservices.xml-rpc2.client.php documentation] for more info. <source lang="php" line="GE...)
• 15:04, 26 October 2010 ‎CytoscapeRPC Python Example (hist) ‎[1,661 bytes] ‎Jjbot (Talk | contribs) (New page: Xmlrpclib is part of the standard Python distribution so no additional packages are required. When using [http://ipython.scipy.org/moin/ Ipython] you can use command line completion to see...)
• 15:02, 26 October 2010 ‎CytoscapeRPC Perl Example (hist) ‎[957 bytes] ‎Jjbot (Talk | contribs) (New page: Here we use the Frontier RPC libraries, these need to be installed separately on your system. <source lang="perl" line="GESHI_FANCY_LINE_NUMBERS"> use strict; use warnings; use Frontier::R...)
• 14:42, 26 October 2010 ‎Agenda BioAssist Programmers Meeting 2010/12/17 (hist) ‎[2,025 bytes] ‎Rob Hooft (Talk | contribs) (New page: {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Parallel ses...)
• 12:35, 26 October 2010 ‎GvNL Meeting on 27-10-2010 (hist) ‎[1,525 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 12:00-17:00, 27 October 2010 Location: Room Vk 5b at SURF. SURFfoundation Hojel City Center, Building D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Ag...)
• 12:59, 20 October 2010 ‎Proteomics:Programmers Meeting on 2010-10-15 (hist) ‎[6,153 bytes] ‎Freek de Bruijn (Talk | contribs) (Programmers Meeting on 2010-10-15 minutes)
• 09:28, 20 October 2010 ‎AMC (hist) ‎[354 bytes] ‎Freek de Bruijn (Talk | contribs) (Added some information about Academic Medical Center.)
• 15:36, 19 October 2010 ‎CytoscapeRPC new (hist) ‎[2,229 bytes] ‎Jjbot (Talk | contribs) (New page: CytoscapeRPC is a Cytoscape plugin which allows users to communicate with Cytoscape over XML-RPC. As most programming languages have an XML-RPC implementation this means that you can creat...)
• 14:45, 19 October 2010 ‎NPC Bioinformatics survey (hist) ‎[3,290 bytes] ‎Horvatovich (Talk | contribs) (New page: == Survey on Bioinformatics Bottleneck and expertise within NPC members == '''Laboratory''' Analytical Biochemistry, Department of Pharmacy, University of Groningen PIs: Peter Horvatovich...)
• 19:52, 18 October 2010 ‎Grails Plug-ins (hist) ‎[7,618 bytes] ‎S.h.sikkema (Talk | contribs) (New page: == Intro == A grails application typically contains multiple plug-ins (or plugins). There are publicly available plug-ins shared through the ([http://www.grails.org/Plugins official Grails...)
• 19:30, 18 October 2010 ‎NBIC Galaxy Server: Stress Test (hist) ‎[651 bytes] ‎Leon (Talk | contribs) (New page: We performed a stress test on October 15th with about 13 users. Here are some results of this test. == Response Time == Feature Request)
• 18:33, 15 October 2010 ‎NGS Meeting on 19-11-2010 (hist) ‎[1,031 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 19 November 2010 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agend...)
• 21:41, 14 October 2010 ‎CytoscapeRPC 1.2 Release notes (hist) ‎[466 bytes] ‎Jjbot (Talk | contribs) (New page: CytoscapeRPC allows users to manage a Cytoscape session over XML-RPC, for a complete overview see the NBIC wiki CytoscapeRPC page. =Some features of the 1.2 release= * fixed default v...)
• 14:33, 27 September 2010 ‎Intext-Semantic Docs (hist) ‎[1,688 bytes] ‎Rob Hooft (Talk | contribs) (New page: == Product service XML exchange format == To display peri-scientific information in the popup, the product service needs the following information: * Name and URL of the supplier * Label...)
• 00:46, 26 September 2010 ‎SAM Quickstart (hist) ‎[832 bytes] ‎Keesvb (Talk | contribs) (New page: = Simple Assay Module = The Simple Assay Module is an example of a assay module implementation for dbNP. It is targeted at storing assays with clinical data, such as blood cholesterol lev...)
• 11:13, 24 September 2010 ‎NBIC Galaxy Server: Admin Meetings (hist) ‎[246 bytes] ‎Leon (Talk | contribs) (New page: = September 24 = 1, Stress testing on 15 October. ** Identify 3 pipelines. # SNP calling and several FASTQ files (Jeroen) # Chip-seq and maybe CAGE/SAGE and probably convert output to W...)
• 14:45, 21 September 2010 ‎CytoscapeRPC 1.1 Release notes (hist) ‎[533 bytes] ‎Jjbot (Talk | contribs) (New page: CytoscapeRPC allows users to manage a Cytoscape session over XML-RPC, for a complete overview see the NBIC wiki CytoscapeRPC page. =Some features of the 1.1 release= * new implementat...)
• 10:56, 21 September 2010 ‎WWW-TALA 2010/07/09 (hist) ‎[549 bytes] ‎Rob Hooft (Talk | contribs) (New page: = What Went Well = * Andra had a backup when the live demo did not work well * Temperature in the room was OK * There was cake! = Take A Look At = * Pieter got a notice last month about...)
• 14:17, 16 September 2010 ‎Agenda BioAssist Programmers Meeting 2010/11/19 (hist) ‎[1,605 bytes] ‎Rob Hooft (Talk | contribs) (New page: {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Parallel ses...)
• 21:39, 15 September 2010 ‎Proteomics:Gaining Momentum Meeting on 2010-09-09 (hist) ‎[4,953 bytes] ‎Rob Hooft (Talk | contribs) (New page: = September 9th, 2010 = Minutes Present: Bas == Perry == Bla == Elizabeth == Bla == Twan == Bla Category:Proteomics:Meeting)
• 17:06, 14 September 2010 ‎NBIC Galaxy Server: GUI (hist) ‎[348 bytes] ‎Leon (Talk | contribs) (New page: This page explains the design of NBIC Galaxy's user interface, i.e. the customized tool pane. == Basic Tools == == NGS Pipelines == * Illumina alignment + SNP/indel detection (GAPSS) * C...)
• 15:54, 9 September 2010 ‎NBIC Galaxy Server: Current Tools (hist) ‎[1,900 bytes] ‎Leon (Talk | contribs) (New page: {| class="wikitable" border=1 + List of tools and libraries on NBIC Galaxy server ! Name !! Version !! Installed location !! Remark |- | Bowtie | 0.12.5 | /usr/local/bowtie/bowtie-0.1...)
• 15:28, 9 September 2010 ‎NBIC Galaxy Server: Next Update Requests (hist) ‎[990 bytes] ‎Leon (Talk | contribs) (New page: This is a list of update requests on NBIC Galaxy server. They will be discussed prior to the next scheduled update: Monday, 2010-10-04)
• 14:46, 9 September 2010 ‎NBIC Galaxy Server: Maintenance Guideline (hist) ‎[240 bytes] ‎Leon (Talk | contribs) (New page: == Schedule == A monthly maintenance is scheduled on first Monday afternoon of each month. == Galaxy == Maintenance) originally created as "Next Generation Sequencing: NBIC Galaxy Maintenance Guideline"
• 18:47, 7 September 2010 ‎NGS Meeting on 15-10-2010 (hist) ‎[850 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 15 October 2010 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agenda...)
• 17:21, 6 September 2010 ‎Accessing Google Sites (hist) ‎[1,530 bytes] ‎Mgjansen (Talk | contribs) (New page: =Accessing Google Sites= In order to access the NBIC Google sites make sure you have a Google account or a GMail account. The NBIC administrator will grant you access on the basis of an e...)
• 12:25, 2 September 2010 ‎NMC DSP Workspaces (hist) ‎[2,398 bytes] ‎Tabma (Talk | contribs) (New page: The metabolomics module (MEMO) should have a workspace for users. A workspace is a physical location on disk where files are stored and can be manipulated/retrieved from. Currently the ide...)
• 11:48, 27 August 2010 ‎Peregrine Normalization (hist) ‎[140 bytes] ‎Leon (Talk | contribs) (New page: == What is normalization == == Normalization on ontology == A normalization flag can be set in the file or DB ontology to indicate if a term should be normalized. == Normalization on in...)
• 09:04, 26 August 2010 ‎Agenda BioAssist Programmers Meeting 2010/09/17 (hist) ‎[1,965 bytes] ‎Rob Hooft (Talk | contribs) (New page: <strong>Note: The meeting is NOT in Utrecht, but in Dalfsen. The morning session and lunch are at "Brasserie de VII Deugden", and the afternoon program and barbecue are at "Hiawatha Actief...)
• 08:55, 26 August 2010 ‎Agenda BioAssist Programmers Meeting 2010/10/15 (hist) ‎[1,657 bytes] ‎Rob Hooft (Talk | contribs) (New page: {| class="wikitable" border=1 |+ Agenda ! Time slot !! Responsible !! Type !! Subject |- | <div style="color:blue;">9:00-10:30</div> | - | - | <div style="color:green;">Parallel ses...)
• 15:15, 24 August 2010 ‎WWW-TALA 2010/08/20 (hist) ‎[283 bytes] ‎Rob Hooft (Talk | contribs) (New page: == What went well == * Skype audio quality == Take a look at == * Inviting skype participants * Announce skype participants * Missing skype video connection * Readability of slides * To...)
• 13:44, 17 August 2010 ‎NMC DSP short term requirements (hist) ‎[3,407 bytes] ‎Mgjansen (Talk | contribs) (New page: ==September 1 2010== The following steps shoud be implemented by September 1st 2010 * Enter Study in GSCF * Retrieve all samples from the study * Assign new names for internal use to e...)
• 15:04, 16 August 2010 ‎CytoscapeRPC 1.0 Release notes (hist) ‎[722 bytes] ‎Jjbot (Talk | contribs) (New page: Overview of the 1.0 release of CytoscapeRPC. CytoscapeRPC allows users to manage a Cytoscape session over XML-RPC, for a complete overview see the NBIC wiki CytoscapeRPC page. =Some ...)
• 09:18, 3 August 2010 ‎Next Generation Sequencing: Alignment WP Discussion Notes (hist) ‎[11,816 bytes] ‎Leon (Talk | contribs) (New page: ===== 20 April ===== Discussions: # We agree toimplement an alignment evaluation/benchmarking module in Galaxy. This module is a kind of wrapper that can invocate a particular alignment to...)
• 12:10, 27 July 2010 ‎List of Dutch biobankers (hist) ‎[55,760 bytes] ‎Leon (Talk | contribs) (New page: {| class="wikitable sortable" border="1" |- | Solr Rank ||Name ||Country||Affiliation|| Total #citations |- | 31||vink jacqueline m||Netherlands||Dept. Biological Psychology, VU Univers...)
• 12:09, 27 July 2010 ‎Details about getting country information (hist) ‎[1,746 bytes] ‎Leon (Talk | contribs) (New page: Code available at gForge: https://gforge.nbic.nl/svn/wikidata/trunk/Scripts/PubMedPreProcessing/bin/biobankers * countryTerms.txt Contains the mapping between a country's UMLS ID and its ...)
• 12:08, 27 July 2010 ‎Special study on Biobankers (hist) ‎[4,548 bytes] ‎Leon (Talk | contribs) (New page: == Available Resources == We have now: * A list of biobanking articles provided by Christine ** /home/leon/NBICshare/Projects/RT00037 - Listing biobankers/Biobanker Profiles/BioBankingArt...)
• 12:07, 27 July 2010 ‎Expert Finder Website or Popup (hist) ‎[2,071 bytes] ‎Leon (Talk | contribs) (New page: = Available Resources = We have now: * Author profiles of all unambiguous PubMed authors. Each author profile is created by indexing (Peregrine) all publications of an author. Two storage ...)
• 12:07, 27 July 2010 ‎Ranking Expert (hist) ‎[1,714 bytes] ‎Leon (Talk | contribs) (New page: = Ranking Variables = == Productivity == = Number of times of an author appears in the K most similar publications / k=dinamic value (depends on the size of result set) == Specialization...)
• 12:06, 27 July 2010 ‎Expert Finder (hist) ‎[35,180 bytes] ‎Leon (Talk | contribs) (New page: = General = == Main references == Two published expert finders: * http://www.biomedcentral.com/1471-2105/8/436 * http://www.ncbi.nlm.nih.gov/pubmed/19221406 = PubMed Author Profile DB =...)
• 10:00, 26 July 2010 ‎NGS Meeting on 20-8-2010 (hist) ‎[992 bytes] ‎Leon (Talk | contribs) (New page: == Time & Location == 9:00-10:30, 20 August 2010 Hojel City Center, gebouw D (5th floor) Graadt van Roggenweg 340 3531 AH Utrecht == Agenda == {| class="wikitable" border=1 + Agenda ...)

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