Proteomics software frameworks

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Revision as of 11:12, 9 March 2010 by Dmitry Katsubo (Talk | contribs)

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Open source

  1. TPP
  2. CPAS
  3. LabKey server (derived from CPAS)
  4. Prequips (on top of TPP)
  5. OpenMS/TOPP
  6. ProteoWizard
  7. XCMS. Written in R
  8. Mass++
  9. mspire
  10. proteios
  11. msInspect
  12. Insilicos Proteomics Pipeline
  13. PatternLab

Software at Seattle Proteome Centre (SPC) at Institute of Systems Biology (ISB):

  1. Corra (also in SourceForge)
  2. TIQAM (see poster)

Commercial

  1. Scaffold
  2. PEAKS
  3. Rosseta Biosoftware
  4. ProteinPilot For ABI
  5. ProteinCenter From Proxeon (formerly Protana)
  6. ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.