Proteomics software frameworks
From BioAssist
Revision as of 22:35, 8 March 2010 by Dmitry Katsubo (Talk | contribs)
Open source
- TPP
- CPAS
- LabKey server (derived from CPAS)
- Prequips (on top of TPP)
- OpenMS/TOPP
- ProteoWizard
- XCMS. Written in R
- Corra (also in SourceForge)
- TIQAM (see [poster http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf])
- Mass++
- mspire
- proteios
- msInspect
- Insilicos Proteomics Pipeline
- PatternLab
Commercial
- Scaffold
- PEAKS
- Rosseta Biosoftware
- ProteinPilot For ABI
- ProteinCenter From Proxeon (formerly Protana)
- ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.