Proteomics software frameworks

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Revision as of 22:35, 8 March 2010 by Dmitry Katsubo (Talk | contribs)

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Open source

  1. TPP
  2. CPAS
  3. LabKey server (derived from CPAS)
  4. Prequips (on top of TPP)
  5. OpenMS/TOPP
  6. ProteoWizard
  7. XCMS. Written in R
  8. Corra (also in SourceForge)
  9. TIQAM (see [poster http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf])
  10. Mass++
  11. mspire
  12. proteios
  13. msInspect
  14. Insilicos Proteomics Pipeline
  15. PatternLab

Commercial

  1. Scaffold
  2. PEAKS
  3. Rosseta Biosoftware
  4. ProteinPilot For ABI
  5. ProteinCenter From Proxeon (formerly Protana)
  6. ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.
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