Difference between revisions of "Proteomics software frameworks"
From BioAssist
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# [http://proteowizard.sourceforge.net/ ProteoWizard] | # [http://proteowizard.sourceforge.net/ ProteoWizard] | ||
# [http://metlin.scripps.edu/download/ XCMS]. Written in R | # [http://metlin.scripps.edu/download/ XCMS]. Written in R | ||
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# [http://groups.google.com/group/massplusplus Mass++] | # [http://groups.google.com/group/massplusplus Mass++] | ||
# [http://mspire.rubyforge.org/ mspire] | # [http://mspire.rubyforge.org/ mspire] | ||
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# [http://www.insilicos.com/products.html Insilicos Proteomics Pipeline] | # [http://www.insilicos.com/products.html Insilicos Proteomics Pipeline] | ||
# [http://pcarvalho.com/patternlab/index.shtml PatternLab] | # [http://pcarvalho.com/patternlab/index.shtml PatternLab] | ||
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| + | Software at Seattle Proteome Centre (SPC) at Institute of Systems Biology (ISB): | ||
| + | # [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge]) | ||
| + | # [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] (see [http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf poster]) | ||
=== Commercial === | === Commercial === | ||
Revision as of 12:12, 9 March 2010
Open source
- TPP
- CPAS
- LabKey server (derived from CPAS)
- Prequips (on top of TPP)
- OpenMS/TOPP
- ProteoWizard
- XCMS. Written in R
- Mass++
- mspire
- proteios
- msInspect
- Insilicos Proteomics Pipeline
- PatternLab
Software at Seattle Proteome Centre (SPC) at Institute of Systems Biology (ISB):
- Corra (also in SourceForge)
- TIQAM (see poster)
Commercial
- Scaffold
- PEAKS
- Rosseta Biosoftware
- ProteinPilot For ABI
- ProteinCenter From Proxeon (formerly Protana)
- ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.
