Difference between revisions of "Proteomics software frameworks"

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# [http://metlin.scripps.edu/download/ XCMS]. Written in R
 
# [http://metlin.scripps.edu/download/ XCMS]. Written in R
 
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge])
 
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge])
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] (see [poster http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf])
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# [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] (see [http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf poster])
 
# [http://groups.google.com/group/massplusplus Mass++]
 
# [http://groups.google.com/group/massplusplus Mass++]
 
# [http://mspire.rubyforge.org/ mspire]
 
# [http://mspire.rubyforge.org/ mspire]

Revision as of 11:10, 9 March 2010

Open source

  1. TPP
  2. CPAS
  3. LabKey server (derived from CPAS)
  4. Prequips (on top of TPP)
  5. OpenMS/TOPP
  6. ProteoWizard
  7. XCMS. Written in R
  8. Corra (also in SourceForge)
  9. TIQAM (see poster)
  10. Mass++
  11. mspire
  12. proteios
  13. msInspect
  14. Insilicos Proteomics Pipeline
  15. PatternLab

Commercial

  1. Scaffold
  2. PEAKS
  3. Rosseta Biosoftware
  4. ProteinPilot For ABI
  5. ProteinCenter From Proxeon (formerly Protana)
  6. ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.