Difference between revisions of "Proteomics software frameworks"
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# [http://metlin.scripps.edu/download/ XCMS]. Written in R | # [http://metlin.scripps.edu/download/ XCMS]. Written in R | ||
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge]) | # [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge]) | ||
| − | # [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] | + | # [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] (see [poster http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf]) |
# [http://groups.google.com/group/massplusplus Mass++] | # [http://groups.google.com/group/massplusplus Mass++] | ||
# [http://mspire.rubyforge.org/ mspire] | # [http://mspire.rubyforge.org/ mspire] | ||
Revision as of 23:35, 8 March 2010
Open source
- TPP
- CPAS
- LabKey server (derived from CPAS)
- Prequips (on top of TPP)
- OpenMS/TOPP
- ProteoWizard
- XCMS. Written in R
- Corra (also in SourceForge)
- TIQAM (see [poster http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf])
- Mass++
- mspire
- proteios
- msInspect
- Insilicos Proteomics Pipeline
- PatternLab
Commercial
- Scaffold
- PEAKS
- Rosseta Biosoftware
- ProteinPilot For ABI
- ProteinCenter From Proxeon (formerly Protana)
- ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.
