Difference between revisions of "Proteomics software frameworks"

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# [http://proteowizard.sourceforge.net/ ProteoWizard]
 
# [http://proteowizard.sourceforge.net/ ProteoWizard]
 
# [http://metlin.scripps.edu/download/ XCMS]. Written in R
 
# [http://metlin.scripps.edu/download/ XCMS]. Written in R
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra]
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# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge])
 +
# [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM]
 
# [http://groups.google.com/group/massplusplus Mass++]
 
# [http://groups.google.com/group/massplusplus Mass++]
 
# [http://mspire.rubyforge.org/ mspire]
 
# [http://mspire.rubyforge.org/ mspire]

Revision as of 21:58, 8 March 2010

Open source

  1. TPP
  2. CPAS
  3. LabKey server (derived from CPAS)
  4. Prequips (on top of TPP)
  5. OpenMS/TOPP
  6. ProteoWizard
  7. XCMS. Written in R
  8. Corra (also in SourceForge)
  9. TIQAM
  10. Mass++
  11. mspire
  12. proteios
  13. msInspect
  14. Insilicos Proteomics Pipeline
  15. PatternLab

Commercial

  1. Scaffold
  2. PEAKS
  3. Rosseta Biosoftware
  4. ProteinPilot For ABI
  5. ProteinCenter From Proxeon (formerly Protana)
  6. ViPDAC. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.