Difference between revisions of "Proteomics software frameworks"

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=== Open source ===
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#redirect [[Proteomics Tools]]
 
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# [http://tools.proteomecenter.org/software.php TPP]
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# CPAS
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# LabKey server (derived from CPAS)
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# [http://prequips.sourceforge.net/ Prequips] (on top of TPP)
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# [http://open-ms.sourceforge.net/news.php OpenMS/TOPP]
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# [http://proteowizard.sourceforge.net/ ProteoWizard]
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# [http://metlin.scripps.edu/download/ XCMS]. Written in R
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# [http://groups.google.com/group/massplusplus Mass++]
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# [http://mspire.rubyforge.org/ mspire]
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# [http://www.proteios.org/ proteios]
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# [http://proteomics.fhcrc.org/CPL/msinspect/index.html msInspect]
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# [http://www.insilicos.com/products.html Insilicos Proteomics Pipeline]
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# [http://pcarvalho.com/patternlab/index.shtml PatternLab]
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Software at Seattle Proteome Centre (SPC) at Institute of Systems Biology (ISB):
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# [http://tools.proteomecenter.org/wiki/index.php?title=Software:Corra Corra] (also in [https://sourceforge.net/projects/corra/ SourceForge])
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# [http://tools.proteomecenter.org/wiki/index.php?title=Software:TIQAM TIQAM] (see [http://www.proteomecenter.org/HUPO/USHUPO_2009_brusniak_etal.pdf poster])
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=== Commercial ===
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# Scaffold
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# PEAKS
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# Rosseta Biosoftware
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# [https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=601680 ProteinPilot] For ABI
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# [http://www.proxeon.com/productrange/data_interpretation/introduction/index.html ProteinCenter] From Proxeon (formerly Protana)
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# [http://proteomics.mcw.edu/vipdac ViPDAC]. It runs on Amazon Elastic Cloud, have to run an instance in Amazon but the source code is available.
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[[Category:Proteomics:Software]]
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Latest revision as of 14:26, 11 April 2011