NBIC IBM workflow
DAF IBM workflow
Sharing the workflows
Shared creatly account (will be published in wiki as well):
- user: firstname.lastname@example.org
- pass: Njo27B
Use the following procedure for sharing the diagrams:
- Register your own account at creatly.
- Draw a diagram.
- Add "email@example.com" as a collaborator
If somebody want to contribute he has to:
- Login as "firstname.lastname@example.org" with password above.
- Make changes & save.
Deliverable 1 proposal
The proposal is a simplified version of the pipeline.
Issues to discuss:
1- Who are the responsible developers for each step? 2- How far are we in adopting APML format in each of these steps? 3- What kind of data is supported in the first two steps? MS^E, centroid peaks? 4- How are the alignments reported in the "Feature Alignment" step?
- We want to compare the results and the performance of this workflow against a similar workflow running in the commercial Progenesis software.
- We need test data: Twan (WUR/PRI) will work on this once the issues above are addressed - Validation of the workflow: Twan will run the comparison with Progenesis - more...
- Discuss integration tests dates and a delivery date.