Difference between revisions of "Proteomics:Programmers Meeting on 2010-02-24"
From BioAssist
m |
m |
||
Line 56: | Line 56: | ||
** Formats: [[APML]] / [[PeakML]] (used in [[RUG]]) / [[mzIdentML]] (official PSi standard) | ** Formats: [[APML]] / [[PeakML]] (used in [[RUG]]) / [[mzIdentML]] (official PSi standard) | ||
* [[User:TwanAmerica|Twan]]: | * [[User:TwanAmerica|Twan]]: | ||
− | ** Have a look how Corra is build. | + | ** Have a look how [[Corra]] is build. |
* [[User:George|George]]: | * [[User:George|George]]: | ||
** Cluster "Hello" application is ready, needs review. | ** Cluster "Hello" application is ready, needs review. | ||
* [[User:Horvatovich|Péter]]: | * [[User:Horvatovich|Péter]]: | ||
− | ** Meeting to integrate application into DAF | + | ** Meeting to integrate application into [[DAF]] |
* [[User:Pneerincx|Pieter]]: | * [[User:Pneerincx|Pieter]]: | ||
** Is working on implementing msconvert as WebService, running msconvert in virtualized environment. | ** Is working on implementing msconvert as WebService, running msconvert in virtualized environment. |
Revision as of 23:09, 8 March 2010
Location and date
- Location: Antonius Deusinglaan 1, 9713 AV Groningen, Building 3211, room 0258
- Date: Wed 24 Feb 2010, from 10:45-16:15
Attenders
- Péter Horvatovich (RUG)
- Morris Swertz (RUG) (added to skype group)
- Ishtiaq Ahmad (RUG)
- George Byelas (RUG)
- Pieter Neerincx (UU)
- Wim Spee (UU)
- Dmitry Katsubo (NBIC)
- Twan America (WUR) (skype ID twan.america)
- Carsten Byrman (UvA) (skype ID carsten.byrman)
Agenda
10:45-11:00 | Introduction |
11:00-11:30 | Organizational questions:
Update from Twan:
|
11:30-12:00 | DAF: progress on previous action points |
12:00-13:00 | DAF: formalization of requirements |
13:00-14:00 | Lunch break & talks |
14:00-16:00 | DAF: brainstorming (modularization & code review) |
16:00-16:15 | Summary & coffee |
Discussion history
- Pieter:
- The tools in our workflows do not use command line.
- We need more face-to-face meetings
- Lack of time due to research work
- There is no clean API for command-line tools
- Péter:
- Some solutions are not generic
- Pieter:
- Twan:
- Have a look how Corra is build.
- George:
- Cluster "Hello" application is ready, needs review.
- Péter:
- Meeting to integrate application into DAF
- Pieter:
Action points
- Identify and implement several data converters.
- Describe a common workflow
- Publish tools
- Check APML XSD for missing parts
Wim:
- Make some efforts to document Java data conversion library, used in UU.
- Synchronize API with Ishtiaq