Other software for Proteomics

From BioAssist
Revision as of 19:58, 14 October 2010 by Freek de Bruijn (Talk | contribs)

Jump to: navigation, search

Software for quantitation

  1. MsQuant
  2. MaxQuant
  3. Census

MRM/SRM (Multiple Reaction Monitoring/Selected Reaction Monitoring)

  1. MRMer
  2. MRMaid
  3. Skyline
  4. MaRiMba Part of TPP (Trans-Proteomic Pipeline)

PTMs (Post-Translational Modifications)

  1. Ascore
  2. Slomo
  3. MS-Alignment (Blind search)
  4. PhosCalc
  5. Modificomb (Blind search)
  6. OpenSea (Blind search)
  7. ModMap (Blind search)

Software for protein inference

  1. ProteinProphet
  2. IDPicker
  3. Combyne
  4. EBP

Other software

  1. MassSpecWavelet
  2. mMass
  3. Database on Demand. Web tool to generate custom FASTA files for peptide identification.

Links


See also the portal page for the Proteomics task force.