Difference between revisions of "Other software for Proteomics"

From BioAssist
Jump to: navigation, search
m (Added definition for PTMs.)
Line 45: Line 45:
 
See also the [[Proteomics|portal page]] for the Proteomics task force.
 
See also the [[Proteomics|portal page]] for the Proteomics task force.
  
[[Category:Proteomics:Software]]
+
[[Category:Proteomics / Tools]]

Revision as of 14:38, 4 November 2010

Software for quantitation

  1. MsQuant
  2. MaxQuant
  3. Census

MRM/SRM (Multiple Reaction Monitoring/Selected Reaction Monitoring)

  1. MRMer
  2. MRMaid
  3. Skyline
  4. MaRiMba Part of TPP (Trans-Proteomic Pipeline)

PTMs (Post-Translational Modifications)

  1. Ascore
  2. Slomo
  3. MS-Alignment (Blind search)
  4. PhosCalc
  5. Modificomb (Blind search)
  6. OpenSea (Blind search)
  7. ModMap (Blind search)

Software for protein inference

  1. ProteinProphet
  2. IDPicker
  3. Combyne
  4. EBP

Other software

  1. MassSpecWavelet
  2. mMass
  3. Database on Demand. Web tool to generate custom FASTA files for peptide identification.

Links


See also the portal page for the Proteomics task force.