Difference between revisions of "Other software for Proteomics"

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m (Added definitions for MRM, SRM and TPP.)
m (Added definition for PTMs.)
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#[http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba MaRiMba] Part of TPP (Trans-Proteomic Pipeline)
 
#[http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba MaRiMba] Part of TPP (Trans-Proteomic Pipeline)
  
== PTMs ==
+
== PTMs (Post-Translational Modifications) ==
  
 
# Ascore
 
# Ascore

Revision as of 19:58, 14 October 2010

Software for quantitation

  1. MsQuant
  2. MaxQuant
  3. Census

MRM/SRM (Multiple Reaction Monitoring/Selected Reaction Monitoring)

  1. MRMer
  2. MRMaid
  3. Skyline
  4. MaRiMba Part of TPP (Trans-Proteomic Pipeline)

PTMs (Post-Translational Modifications)

  1. Ascore
  2. Slomo
  3. MS-Alignment (Blind search)
  4. PhosCalc
  5. Modificomb (Blind search)
  6. OpenSea (Blind search)
  7. ModMap (Blind search)

Software for protein inference

  1. ProteinProphet
  2. IDPicker
  3. Combyne
  4. EBP

Other software

  1. MassSpecWavelet
  2. mMass
  3. Database on Demand. Web tool to generate custom FASTA files for peptide identification.

Links


See also the portal page for the Proteomics task force.