Difference between revisions of "Other software for Proteomics"

From BioAssist
Jump to: navigation, search
m (Added definitions for MRM, SRM and TPP.)
Line 6: Line 6:
 
# [http://fields.scripps.edu/census/index.php Census]
 
# [http://fields.scripps.edu/census/index.php Census]
  
== MRM/SRM ==
+
== MRM/SRM (Multiple Reaction Monitoring/Selected Reaction Monitoring) ==
  
 
#[http://proteomics.fhcrc.org/CPL/MRMer.html MRMer]
 
#[http://proteomics.fhcrc.org/CPL/MRMer.html MRMer]
 
#[http://www.mrmaid.info/ MRMaid]
 
#[http://www.mrmaid.info/ MRMaid]
 
#[https://brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline/begin.view Skyline]
 
#[https://brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline/begin.view Skyline]
#[http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba MaRiMba] Part of TPP
+
#[http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba MaRiMba] Part of TPP (Trans-Proteomic Pipeline)
  
 
== PTMs ==
 
== PTMs ==

Revision as of 19:54, 14 October 2010

Software for quantitation

  1. MsQuant
  2. MaxQuant
  3. Census

MRM/SRM (Multiple Reaction Monitoring/Selected Reaction Monitoring)

  1. MRMer
  2. MRMaid
  3. Skyline
  4. MaRiMba Part of TPP (Trans-Proteomic Pipeline)

PTMs

  1. Ascore
  2. Slomo
  3. MS-Alignment (Blind search)
  4. PhosCalc
  5. Modificomb (Blind search)
  6. OpenSea (Blind search)
  7. ModMap (Blind search)

Software for protein inference

  1. ProteinProphet
  2. IDPicker
  3. Combyne
  4. EBP

Other software

  1. MassSpecWavelet
  2. mMass
  3. Database on Demand. Web tool to generate custom FASTA files for peptide identification.

Links


See also the portal page for the Proteomics task force.