Difference between revisions of "Other software for Proteomics"

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(New page: == Software for quantitation == # MsQuant # MaxQuant # [http://fields.scripps.edu/census/index.php Census] == MRM/SRM == #[http://proteomics.fhcrc.org/CPL/MRMer.html MRMer] #[http://ww...)
 
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== Software for quantitation ==
 
== Software for quantitation ==
  

Revision as of 20:18, 21 June 2010

Software for quantitation

  1. MsQuant
  2. MaxQuant
  3. Census

MRM/SRM

  1. MRMer
  2. MRMaid
  3. Skyline
  4. MaRiMba Part of TPP

PTMs

  1. Ascore
  2. Slomo
  3. MS-Alignment (Blind search)
  4. PhosCalc
  5. Modificomb (Blind search)
  6. OpenSea (Blind search)
  7. ModMap (Blind search)

Software for protein inference

  1. ProteinProphet
  2. IDPicker
  3. Combyne
  4. EBP

Other software

  1. MassSpecWavelet
  2. mMass
  3. Database on Demand. Web tool to generate custom FASTA files for peptide identification.

Links


See also the portal page for the Proteomics task force.