Difference between revisions of "NGS Member Overview"
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Sequence platforms: Illumina. | Sequence platforms: Illumina. | ||
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Software that we use: Galaxy, Molgenis, Bowtie, Illumina pipeline, Taverna (and more in other platforms) | Software that we use: Galaxy, Molgenis, Bowtie, Illumina pipeline, Taverna (and more in other platforms) | ||
| − | Application developed: SequenceLIMS with Joris | + | Application developed: SequenceLIMS with Joris. Some more info at http://www.molgenis.org |
| − | Some info at http://www.molgenis.org | + | |
Programming language / IT platforms: | Programming language / IT platforms: | ||
* Programming languages: Java, Tomcat, MySQL, PHP, Freemarker, Shell scripting, Taverna | * Programming languages: Java, Tomcat, MySQL, PHP, Freemarker, Shell scripting, Taverna | ||
* Linux, Windows, Mac | * Linux, Windows, Mac | ||
Revision as of 14:56, 16 November 2009
Jan van Haarst
Profile on networks: LinkedIn, myExperiment
Matt Hestand
Profile on networks: LinkedIn, myExperiment
Joris
Profile on networks: LinkedIn, myExperiment
Leon
Profile on networks: LinkedIn, myExperiment
Barbera van Schaik
Profile on networks: LinkedIn[1], myExperiment[2], Website[3]
Sequence platforms: Roche FLX/Titanium, ABI Solid (I have experience with the roche platform, my colleague is working with solid data)
Software I often use: blat (local and on grid), blast (on grid), roche package, celera assembler (cabog), R (graph package)
Sequence applications I (have) work(ed) on:
- Basic stuff: group sequences per MID, count things, run existing analysis software
- Gene (splicing) variant detection
- Metagenomics
- Sequence assembly of bacteria strains
Programming language / IT platforms:
- Perl and shell scripting
- Linux, Dutch grid (EBioInfra[4], VBrowser, Moteur)
Morris Swertz
Profile on networks: LinkedIn[5], myExperiment[6], UMC Groningen [7] European Bioinformatics Intitute [8]
Sequence platforms: Illumina.
Software that we use: Galaxy, Molgenis, Bowtie, Illumina pipeline, Taverna (and more in other platforms)
Application developed: SequenceLIMS with Joris. Some more info at http://www.molgenis.org
Programming language / IT platforms:
- Programming languages: Java, Tomcat, MySQL, PHP, Freemarker, Shell scripting, Taverna
- Linux, Windows, Mac
