Difference between revisions of "NBIC Tools"

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| [http://www.win.tue.nl/~mwestenb/genevis/download.html download]
 
| [http://www.win.tue.nl/~mwestenb/genevis/download.html download]
 
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| protein function prediction
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| protein function, prediction
 
| [https://wiki.nbic.nl/index.php/BMRF-based_protein_function_prediction BMRF]
 
| [https://wiki.nbic.nl/index.php/BMRF-based_protein_function_prediction BMRF]
 
| BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters.  
 
| BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters.  
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| [http://www.ncbi.nlm.nih.gov/pubmed/20195360 pubmed:20195360]
 
| [http://www.ncbi.nlm.nih.gov/pubmed/20195360 pubmed:20195360]
 
| [https://trac.nbic.nl/bmrf/downloads download]
 
| [https://trac.nbic.nl/bmrf/downloads download]
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| database
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| [http://www.peroxisomekb.nl/ PeroxisomeKB]
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| The peroxisomal knowledge base focuses on peroxisomal pathways and several related genetic disorders. The knowledgebase is based on  a new framework to construct knowledge bases with concept maps for presentation of information and the web ontology language OWL for the representation of information [BioExpert].
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| [http://www.bioinformaticslaboratory.nl/twiki/bin/view/BioLab/PeopleBioLab Marcel Willemsen] and [http://www.bioinformaticslaboratory.nl/twiki/bin/view/BioLab/AntoineVanKampen Antoine van Kampen]
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| [http://www.ncbi.nlm.nih.gov/pubmed/18689827 pubmed:18689827]
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|
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|-
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| framework, database
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| [http://www.bioexpert.nl/ BioExpert]
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Revision as of 10:56, 5 August 2011

Category Package Description Author Publication Software
visualisation Genevis GENeVis is an application for integrated visualization of genome expression and network dynamics in both regulatory networks and metabolic pathways. Michel A. Westenberg paper download
protein function, prediction BMRF BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters. Yiannis Kourmpetis and Cajo ter Braak pubmed:20195360 download
database PeroxisomeKB The peroxisomal knowledge base focuses on peroxisomal pathways and several related genetic disorders. The knowledgebase is based on a new framework to construct knowledge bases with concept maps for presentation of information and the web ontology language OWL for the representation of information [BioExpert]. Marcel Willemsen and Antoine van Kampen pubmed:18689827
framework, database BioExpert