Difference between revisions of "NBIC Tools"

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| protein function prediction
 
| protein function prediction
| BMRF
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| [https://wiki.nbic.nl/index.php/BMRF-based_protein_function_prediction BMRF]
 
| BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters.  
 
| BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters.  
| Yiannis Kourmpetis and Cajo ter Braak
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| [http://www.biometris.wur.nl/UK/Staff/Yiannis+Kourmpetis/ Yiannis Kourmpetis and Cajo ter Braak]
 
| [http://www.ncbi.nlm.nih.gov/pubmed/20195360 pubmed:20195360]
 
| [http://www.ncbi.nlm.nih.gov/pubmed/20195360 pubmed:20195360]
 
| [https://trac.nbic.nl/bmrf/downloads download]
 
| [https://trac.nbic.nl/bmrf/downloads download]
 
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Revision as of 10:46, 5 August 2011

Category Package Description Author Publication Software
visualisation Genevis GENeVis is an application for integrated visualization of genome expression and network dynamics in both regulatory networks and metabolic pathways. Michel A. Westenberg paper download
protein function prediction BMRF BMRF is an easy to use R program for protein function prediction using Markov Random Field analysis. Inferences are made by Markov Chain Monte Carlo. Besides function prediction this method estimates accurately the network parameters. Yiannis Kourmpetis and Cajo ter Braak pubmed:20195360 download