NBIC Galaxy Server: Next Update Requests

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This is a list of update requests on NBIC Galaxy server. They will be discussed prior to the next scheduled update: Monday, 2010-10-04

  1. After the galaxytools repo was re-organized, update the installation on the galaxy server for these changes.
  2. Customize tool pane and only show pipeline (workflows) and some essential tools. --Leon 16:38, 9 September 2010 (CEST)
  3. Setting Up the Reference Genomes (Human, Mouse, TAIR?) for NGS Tools
    (e.g. BWA, Lastz, etc). Refer to http://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup
  4. Enabling the test framework, so we'll get notified quickly if something breaks (after maintenance).
  5. Add a cleanup script to reclaim disk space:
    Check the last access timestamp of history items and delete the ones that were not accessed for 6 ??? months. We should use the scripts provided by Galaxy.
  6. Adding support for web services
    Using the "Suite of Web Service Addition Tools" provided by the University of Georgia (Galaxy community site -> Data source category (http://community.g2.bx.psu.edu/))
  7. Enabling reports.
  8. Update the system with all security patches