NBIC Galaxy Server: Current Tools

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Name Version Installed location Remark
Bowtie 0.12.5 /usr/local/bowtie/bowtie-0.12.5/
Cufflinks 0.8.3 /usr/local/cufflinks/cufflinks-0.8.3.Linux_x86_64/
Samtools 0.1.8 /usr/local/samtools/samtools-0.1.8/
Tophat 1.0.14 /usr/local/tophat/tophat-1.0.14.Linux_x86_64/
VarScan 2.2 /usr/local/VarScan/VarScan.v2.2.jar
R 2.11.0 /nbic/prog/R-2.11.0