Difference between revisions of "CytoscapeRPC 1.3 Release notes"
From BioAssist
(Created page with "New functionality: * raise and resize Cytoscape network windows * decouple node width & hight: after doing this you can control the node width and hight seperately from your vizm...") |
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| − | New functionality | + | =New functionality= |
* raise and resize Cytoscape network windows | * raise and resize Cytoscape network windows | ||
* decouple node width & hight: after doing this you can control the node width and hight seperately from your vizmaps. | * decouple node width & hight: after doing this you can control the node width and hight seperately from your vizmaps. | ||
| Line 13: | Line 13: | ||
* check if edges / nodes / networks have a certain attribute | * check if edges / nodes / networks have a certain attribute | ||
| − | Bug fixes | + | =Bug fixes= |
* a couple of ConcurrentModificationExceptions have been fixed. | * a couple of ConcurrentModificationExceptions have been fixed. | ||
* work around for old JRE versions on MacOS X: the activate option doesn't work. Now catches the error and asks the user to start the plugin anyway. | * work around for old JRE versions on MacOS X: the activate option doesn't work. Now catches the error and asks the user to start the plugin anyway. | ||
| − | New functions available for creating vizmappers | + | =New functions available for creating vizmappers= |
* createDiscreteMapper | * createDiscreteMapper | ||
* createPassthroughMapper | * createPassthroughMapper | ||
Revision as of 13:24, 4 February 2011
New functionality
- raise and resize Cytoscape network windows
- decouple node width & hight: after doing this you can control the node width and hight seperately from your vizmaps.
- invert node selection
- remove selected nodes
- set selected edges
- invert edge selection
- remove selected edges
- reset rootgraph (Warning: this manually resets the cytoscape rootgraph without restarting Cytoscape. This is not part of the standard Cytoscape functionality so your mileage may vary.)
- added all the GlobalAppearance modification functions (change background color etc.)
- retrieve the children, parents and siblings of selected nodes
- retrieve types of network attributes
- check if edges / nodes / networks have a certain attribute
Bug fixes
- a couple of ConcurrentModificationExceptions have been fixed.
- work around for old JRE versions on MacOS X: the activate option doesn't work. Now catches the error and asks the user to start the plugin anyway.
New functions available for creating vizmappers
- createDiscreteMapper
- createPassthroughMapper
- createContinuousMapper
These functions are intended to replace the other (now deprecated) vizmap functions. The deprecated functions will still be available in version 1.4.
- createEdgesFromVector has been deprecated in favour of createEdges with the same parameters.
