Biobanking Tools

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Category Package Description Performance experience
GWAS GenABEL Genome Wide SNP association analysis in R None
Imputation Impute Impute is a program for estimating unobserved genotypes in SNP association studies None
Imputation BEAGLE Analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. None
Imputation MACH Markov Chain based Haplotyper to resolve long haplotypes or infer missing genotypes in samples of unrelated individuals None
Ontology OntoCAT Toolkit to easily retrieve ontology terms for phenotype annotation from public Ontology resources OLS and Bioportal and from local files. Extensive.