Biobanking Tools

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Category Package Description Performance experience
GenABEL [1] Genome Wide SNP association analysis in R None
Impute [2] Impute is a program for estimating unobserved genotypes in SNP association studies None
BEAGLE [3] Analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. None
MACH [4] Markov Chain based Haplotyper to resolve long haplotypes or infer missing genotypes in samples of unrelated individuals None
OntoCAT [5] Toolkit to easily retrieve ontology terms for phenotype annotation from public Ontology resources OLS and Bioportal and from local files. Extensive.