Difference between revisions of "Biobanking Tools"

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(Created page with "{| class="wikitable sortable" border="1" |- ! Category ! Package ! Description ! Performance experience |- | GenABEL | [http://www.genabel.org/] | Genome Wide SNP association ana...")
 
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| None
 
| None
 
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|-
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| MACH
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| [http://www.sph.umich.edu/csg/abecasis/MACH]
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| Markov Chain based Haplotyper to resolve long haplotypes or infer missing genotypes in samples of unrelated individuals
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| None
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|-
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| OntoCAT
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| [http://www.ontocat.org]
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| Toolkit to easily retrieve ontology terms for phenotype annotation from public Ontology resources OLS and Bioportal and from local files.
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| Extensive.
 
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Revision as of 16:26, 18 March 2011

Category Package Description Performance experience
GenABEL [1] Genome Wide SNP association analysis in R None
Impute [2] Impute is a program for estimating unobserved genotypes in SNP association studies None
BEAGLE [3] Analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. None
MACH [4] Markov Chain based Haplotyper to resolve long haplotypes or infer missing genotypes in samples of unrelated individuals None
OntoCAT [5] Toolkit to easily retrieve ontology terms for phenotype annotation from public Ontology resources OLS and Bioportal and from local files. Extensive.