Dmitry has left NBIC. His tasks in the BioAssist Engineering Team are taken over by his colleagues. Please contact Rob Hooft for inquiries.
Information about Dmitry Katsubo
Mobile phone: +31 651 96-30-34
Birth place and date: Republic of Belarus, Gomel, 4th of September, 1980
Family status: single
Years of work experience in IT: 8
Education Degree: Master of Science, diploma title: "Using openMosix clustering system for the distributed computations"
IT Profile & Technologies: Java (J2EE, WebServices, ORM, Spring), Perl, C++; SOAP/REST, XSLT/XPath, XML/RDF, SQL, SPARQL, SemanticWeb
Occupation while working at NBIC
Two my major directions are:
- Scientific programmer at NBIC. A member of BioAssist Engineering Team. A coordinator of proteomics platform.
- A part of BioSemantics group, department of medical informatics (located at Erasmus Medical Centre).
Storage Service for EU-ADR project This webservice runs on top of an triple store and provides a number of pre-cooked queries to the store. The triple store has been filled by mining texts from PubMed, Drugbank, DailyMed for the relations. Also this is a complete web service to get all targets (genes, proteins, enzymes, etc.) that are related to a drug-event pair. Source databases are: Meyler’s Side Effects of Drugs, Martindale, DRUGDEX, SPCs, and Physician Desk Reference.
Peregrine: The main goal of this project is to parse the input text and search for predefined terms. The term may refer one or several concepts and Peregrine tries to disambiguate them. On the last stage Peregrine builds the semantic relations based on position in the sentence.