Proteomics hardware

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Proteomics require quite extensive computer hardware. This page documents some of the computing and storage resources present at a few of our participant locations.

EMC

Server: bios5

  • CPU: 2x Quad-Core AMD Opteron™ @2GHz (200MHz clock, 64Kb L1, 512Kb L2)
  • HDD: 2x 1Tb Seagate ST31000333AS SATA (ext3 FS)
  • RAM: 32Gb (8x 4Gib 333MHz DIMM)
  • Lan: nForce ethernet
  • OS: Linux Ubuntu 4.3.2, kernel 2.6.27

Server: aneurist

  • CPU: 2x DualCore Intel® Xeon® @3GHz (1333MHz clock, 32K L1, 4Mb L2)
  • HDD: 1x 150Gb + 1x 700Gb SCSI (HP CISS) (ext3 FS)
  • RAM: 32Gb (8x 4Gib 667MHz DIMM)
  • Lan: 2x Broadcom NetXtreme II BCM5708 1000Base-T
  • OS: Linux Ubuntu 4.3.2, kernel 2.6.27


RUG

Servers at Péter Horvatovich Group

Server Codename: Phenyx-ABserv1

Description: This machine is dedicated to protein search by Phenyx

  • CPU: 2x Quad-Core Intel® Xeon® @2.33GHz (64-bit with 2331MHz clock speed)
  • Total processor: 8
  • RAM: 16Gb (4x 4Gib)
  • Lan: 1Gib/s
  • OS: Linux Ubuntu 8.04.4
Internal Storage (Phenyx-ABserv1)
Drive Name # of disk(s)    RAID Level    File System    Size    Regular Backup
HDD-1 System Derive 1x 1Tb ext3 1Tb No
HDD-2 Internal Data drive 4x 1.5 Tb RAID 01 ext3 3Tb Monthly
Total disk space: 4Tb
Server Codename: ABserv2

Description: This machine is dedicated to general data processing and calculation

  • CPU: 2x Quad-Core Intel® Xeon® @2.33GHz (64-bit with 2331MHz clock speed)
  • Total processor: 8
  • RAM: 8Gb (4x 2Gib)
  • Lan: 1Gib/s
  • OS: Linux Ubuntu 8.04.4
Internal Storage (ABserv2)
Drive Name # of disk(s)    RAID Level    File System    Size    Regular Backup
HDD-1 System Derive 1x 1Tb ext3 1Tb No


Server Codename: ABserv3

Description: This machine is dedicated to general data processing and calculation

  • CPU: 2x Quad-Core Intel® Xeon® @2.33GHz (64-bit with 2331MHz clock speed)
  • Total processor: 8
  • RAM: 8Gb (4x 2Gib)
  • Lan: 1Gib/s
  • OS: Linux Ubuntu 8.04.4
Internal Storage (ABserv3)
Drive Name # of disk(s)    RAID Level    File System    Size    Regular Backup
HDD-1 System Derive 1x 1Tb ext3 1Tb No


Server Codename: FileServ

Description: This machine is dedicated for File server (FTP etc)

External Storage( For All Servers)

Drive    Name # of disk(s)    RAID Level    File System    Size    Regular Backup
Storage-1   Users work space 2x 1Tb RAID NTFS 2Tb Weekly
Storage-2 2TB Drive for qTOF data 4x 0.5 Tb RAID ext3 2Tb Monthly
Storage-3 2TB Drive2 for qTOF data 4x 0.5 Tb RAID ext3 2Tb Monthly
Storage-4 1TB Drive 2x 0.5 Tb RAID ext3 1Tb
Storage-5 5TB Drive 5x 1Tb RAID ext3 5Tb No
Total disk space: 12Tb

See also the portal page for the proteomics task force