Proteomics:Programmers Meeting on 2011-08-12

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Location and time

  • Location: Hojel City Center, building D (5th floor), Graadt van Roggenweg 340, 3531 AH Utrecht
  • Date: Friday August 12th, 2011
  • Time: 9:00-10:30



  1. Action points and status updates
  2. Next meeting

Action points and status updates


  • Henk is just back from a nice, long holiday.
  • He is analyzing a lot of phosphorylated data.
  • Henk is also looking for algorithms that can predict horizontal gene transfer.


  • Ishtiaq has finished merging classification data sets from grids.
  • He is collaborating with the University of Westminster on desktop grids and is expecting feedback from them.
  • He has more work planned for parameter optimizations and parametrization.
  • He will add an enhanced tool to the NBIC Galaxy.
  • Finally, Ishtiaq has enjoyed a nice, short vacation.


  • Bas and Freek visited the OncoProteomics laboratory (VUmc) and had a very good first meeting with Connie Jiménez and her colleagues. We want to cooperate on CTMM TraIT.
  • A meeting is planned with people from Erasmus MC, NBIC and NPC to discuss CTMM TraIT and our collaboration in the task force.
  • Irene Nooren (e-BioGrid) took the initiative to organize a workshop on high-performance computing (including job submission frameworks). Initial focus was on NGS, but we will broaden the scope to include proteomics as well.
  • And lastly, Freek also enjoyed a nice, long holiday.

Next meeting

Friday September 16th 9:00-10:30 will be our next programmer's meeting.