Next Generation Sequencing: Infrastructure

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Life Science Grid Portal

The Life Science Grid Portal contains a number of bioinformatics applications which you can use. No knowledge about Grid is necessary. You don't even need a Grid certificate. What we do ask from you is to register as a user with a valid email address.

The popular tool "Maq" is already supported by the Grid Portal as an application.

Hadoop

Presentations about Hadoop

http://www.cloudera.com/blog/2009/12/02/hadoop-world-hadoop-for-bioinformatics/

http://www.cloudera.com/blog/2009/11/19/hadoop-world-protein-alignment-from-paul-brown/

BioJava

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures

Links

http://ebiogrid.nl/

http://www.biggrid.nl/

http://www.sara.nl/