From BioAssist
Jump to: navigation, search

Installation Guide UCSC liftOver

(Installation Guide is a bit of an overstatement at the moment...)

Some useful links:

  1. Download binary:
  2. Configuration files (known as chains), for example for hg19:
  3. Web interface:

Configuration file locations:

  1. Main liftOver configuration file: /opt/galaxy/prog/galaxy-2011-7-21/tool-data/liftOver.loc
  2. Chain configuration files (like hg18ToHg17.over.chain): /opt/galaxy/prog/galaxy-2011-7-21/tool-data/liftOver/*.over.chain