Data Visualization

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Web sites about data visualization

Conferences

  • Vizbi, Workshop on visualizing biological data

Applications

Network visualization

  • Cytoscape is an open source software platform for visualizing complex-networks
  • Tulip is an information visualization framework dedicated to the analysis and visualization of relational data.
  • Gephi is an interactive visualization and exploration platform
  • BioLayout Express 3d is a powerful new tool for the visualization and analysis of networks derived from biological systems.
  • NAViGaTOR Network Analysis, Visualization, & Graphing TORonto is a software package for visualizing and analyzing protein-protein interaction networks.
  • Arena 3D Visualizing biological networks in 3D
  • GENeVis

Pathway visualization

(see also Metabolomics_Visualization)

  • KEGG Atlas is an advanced graphical interface to explore the KEGG global maps with zooming and navigation capabilities.
  • iPath is a web-based tool for the visualization, analysis and customization of the various pathways maps.
  • PathVisio is a tool for displaying and editing biological pathways.
  • Biological Networks

Tree visualization

Small multiples

Other visualization tools

Tiled displays

Papers

Books