CytoscapeRPCExamples

A number of examples for CytoscapeRPC have been provided in the CytoscapeRPC svn under scripts. A brief description is given here.

• LoadNetwork.py: script to load sif, noa and eda files into Cytoscape.
• cytoscape_movie.py: a script which load a number of nodes and saves different view to file. It changes the node color, shape and selection. Use the included command to turn the image files into a movie.
• many_networks.py: a script to test the speed with which networks can be created in Cytoscape using CytoscapeRPC.
• perl.pl: a demo script for perl, creates nodes, performs a layout and sets some vizmappers.
• php.php: a small script demonstrating how CytoscapeRPC can be used from PHP.
• poster.py: script which creates the graphics used in a poster on CytoscapeRPC.
• position_example.py: script which shows an example of how to set positions using CytoscapeRPC.
• R_example.r: script which shows some basic functionality in R.
• random_network.py: random network generator.