2010 Symposium on Metadata Capture

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Organizers: Morris Swertz (MOLGENIS) and Kees van Bochove (GSCF, dbNP, NMC DSP)

Date: Wednesday November 10, 2010 (GMT+1 timezone)

Venue: NIBI, Catharijnesingel 54, Utrecht, The Netherlands

Goals:

  • Harmonization of data models and exchange formats
  • De-duplification of GUI efforts

Invitees:

  • Christine Chichester, CIO of NBIC
  • Peter Horvatovich, Groningen University, proteomics
  • Machiel Jansen, SARA, NMC DSP project
  • Kostas Karasavvas, myGrid project
  • Erik Roos, Groningen University, AnimalDB
  • Scott Marshall, W3C HCLS IG co-chair, LUMC/UvA
  • Marco Roos, University of Amsterdam, BioSemantics
  • Frans Ruzius, Hubrecht Laboratory
  • Katy Wolstencroft, Manchester University, SysMO-DB study platform

Agenda:

Agenda
Time slot Responsible Type Subject
9:00-9:30
- -
Coffee and introductions
9:30-9:45
Kees van Bochove -
Welcome and purpose
9:45-10:00
Katy Wolstencroft Presentation
10:00-10:15
Morris Swertz Presentation
10:15-10:30
Kees van Bochove Presentation
10:30-10:45
- -
Coffee
10:45-11:00
Frans Paul Ruzius? End User perspective
11:00-11:15
Peter Horvatovich End User perspective
11:15-11:45
Katy Wolstencroft Discussion
Alignment of goals and possibilities for a synergic effort
11:45-12:15
Kees van Bochove Presentation
Approaches of other open source projects: LabKey, ISACreator, OpenBIS
12:15-12:30
Morris Swertz Discussion
Wrap-up of the morning
12:30-13:00
- -
Lunch
13:00-13:30
- -
Walk in Utrecht
13:30-14:20
Katy, Morris, Kees Demo/Workshop
Reflection on our current formats (ISATAB/MAGETAB, XGAP, FuGE/PaGE) and ontologies - preparing the ground for the Semantic Web question
14:20-14:30
- -
Tea
14:30-15:20
Scott Marshall Demo/Workshop
15:20-15:30
- -
Tea
15:30-16:20
Sudeshna Das Demo/Workshop
SWANmyExpArray use case: interoperability of microarray data and the Annotation Ontology
16:20-16:30
- -
Tea
16:30-16:50
Morris Swertz Discussion
Parking Lot
16:50-17:00
Kees van Bochove Discussion
Evaluation
17:00-17:30
- -
Drinks @ Hagenouw (in Hoog Catharijne)


Follow-up actions
Date Action People Responsible
Dec. 2010 Meet about NGS LIMS systems - align Hubrecht and Groningen efforts Frans Paul, Morris, Leiden: Peter and Jeroen Leon Mei
Dec. 2010 Meetup between proteomics and metabolomics taskforces to align efforts of MS preprocessing and metabolomics study capture (Peter to meet with Theo Reijmers first) Peter Horvatovich, Machiel Jansen, Kees van Bochove Machiel Jansen?
- Investigate Taverna Server v2 Peter Horvatovich Peter Horvatovich
 ? Align needs for genetics (G2P) study capture Morris Swertz, Mummy Thorisson, Matthew Lange, Kees van Bochove, Bioshare people? (dbSNP and other structural variation identifiers) Kees van Bochove
Dec. 2010 Kees van Bochove, Morris Swertz, Katy Wolstencroft Share data models more in detail and possibly exchange of user interface components for study capture Katy Wolstencroft
 ? Use transcriptomics as a use case for exporting RDF from all three systems with the same ontologies as much as possible Sudeshna Das, Kees van Bochove, Morris Swertz, Katy Wolstencroft Morris Swertz?